16S rRNA Refseq V15.2 Genomic RefSeq V9.03
Downloadable Data in HOMD
1.Phylogenetics
TypeFormats
Phylogenetic tree of HOMD 16S rRNA Reference Sequences in SVG format in Newick format Sequence ID Table
Phylogenetic tree of 16S rRNA gene sequences identified in HOMD genomes in SVG format in Newick format Sequence ID Table
Phylogenomic tree based on conserved proteins identified from HOMD genomes in SVG format in Newick format Sequence ID Table
Phylogenetic tree or ribosomal proteined identified from HOMD genomes in SVG format in Newick format Sequence ID Table
2.Batch Taxonomic Data Download:
 
TypeFormats
Taxon Table Tab Delimited Text
(View in browser)
Tab Delimited Text
(Save to file)
MS Excel Format
(Save to file)
Taxonomic Hierarchy Tab Delimited Text
(View in browser)
Tab Delimited Text
Save to file)
MS Excel Format
(Save to file)
Taxonomic Level Tab Delimited Text
(View in browser)
Tab Delimited Text
(Save to file)
MS Excel Format
(Save to file)
3.Batch Genomic Meta Informaton Download:
 
TypeFormats
Sequence Meta Information Tab Delimited Text
(View in browser)
Tab Delimited Text
(Save to file)
MS Excel Format
(Save to file)
4.HOMD Database Schema
5.HOMD Database Structures:
DatabaseTable Structure
HOMD_taxonomy Text SQL
HOMD_genomes Text SQL
static_genome Text SQL
annotated_genome Text SQL

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