HMT_ID	Domain	Phylum	Class	Order	Family	Genus	Species	Status	Body_site	Warning	Type_strain	16S_rRNA	Clone_count	Clone_%	Clone_rank	Synonyms	NCBI_taxon_id	NCBI_pubmed_count	NCBI_nucleotide_count	NCBI_protein_count	Genome_ID	General_info	Cultivability	Phenotypic_characteristics	Prevalence	Disease	References
001	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Bartonellaceae	Bartonella	schoenbuchensis	Named	Unassigned			NR_025410	0	0.00	0	Strain TFI A28SC	165694	9	93	5894	SEQF2664	N/A					
002	Bacteria	Proteobacteria	Alphaproteobacteria	Caulobacterales	Caulobacteraceae	Caulobacter	sp. HMT 002	Phylotype	Unassigned			DQ493433	2	0.01	409	Oral Clone AW149	712237	0	2	0		N/A					
003	Bacteria	Proteobacteria	Alphaproteobacteria	Sphingomonadales	Sphingomonadaceae	Sphingomonas	echinoides	Named	Unassigned		ATCC 14820	AF385529	2	0.01	409	Oral Clone AV069	59803	0	2	0	SEQF2933	N/A					
004	Bacteria	Proteobacteria	Alphaproteobacteria	Sphingomonadales	Sphingomonadaceae	Sphingomonas	sp. HMT 004	Phylotype	Unassigned			AF385533	1	0.00	459	Oral Clone AW030	712605	0	1	0		N/A					
005	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter	lwoffii	Named	Unassigned												SEQF2884						
006	Bacteria	Proteobacteria	Alphaproteobacteria	Sphingomonadales	Sphingomonadaceae	Sphingomonas	sp. HMT 006	Phylotype	Unassigned			AY349411	1	0.00	459	Oral Clone FI012	712606	0	1	0		N/A					
007	Bacteria	Proteobacteria	Alphaproteobacteria	Sphingomonadales	Sphingomonadaceae	Porphyrobacter	tepidarius	Named	Unassigned		DSM 10594	AJ223452	2	0.01	409	Oral Clone BF019	60454	0	2	0	SEQF2929	N/A					
008	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Mogibacterium	vescum	Named	Unassigned			AB021702	11	0.03	267		86333	1	13	0		N/A					
010	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter	radioresistens	Named	Unassigned												SEQF2864						
011	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Eikenella	sp. HMT 011	Lost	Oral			L06165	1	0.00	459	Oral Strain UB-204	712272	0	1	0		N/A					
012	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Kingella	sp. HMT 012	Phylotype	Oral			AF366267	10	0.03	280	Oral Clone DE012	712319	0	10	0		N/A					
013	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	bacilliformis	Named	Oral			AY005029	54	0.15	118	Oral Clone AK105	267212	4	158	5922	SEQF1969	N/A					
014	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	oralis	Named	Oral		6332|DSM 25276|LMG 26725	AY005025|AY005023|GQ131417|JN104029	60	0.17	109	 Oral Clone AP085|Oral Clone AP015 | Neisseria sp. F0314| Neisseria sp. oral taxon 014	1107316	2	17	1	SEQF1659	Neisseria sp. Oral taxon 014 strain F0314 has been isolated from a human subject by the Moore's Laboratory in June 1982. The subject was a 23 year old American white female. The bacteria was isolated from the subgingival oral biofilm at a healthy site. The bacteria was grown in anaerobic conditions. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference GQ131417. The strain is available at www.bei.org under the reference HM-91. This strain is part of the reference strains for the oral section of the Human Microbiome Project.  The species has been named Neisseria oralis.  The genome is available as ADEA00000000.  The genome link above may be disrupted until name at NCBI officially gets changed.					
017	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Anaerococcus	octavius	Named	Unassigned																		
018	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	sp. HMT 018	Phylotype	Oral			AY005027	5	0.01	343	Oral Clone AP132	712400	0	5	0		N/A					
019	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	accolens	Named	Nasal												SEQF2865|SEQF2935|SEQF2937|SEQF2940|SEQF2953|SEQF2954|SEQF2986|SEQF2988|SEQF3026|SEQF3027						
020	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	sp. HMT 020	Unnamed	Oral			AY005028	5	0.01	343	Strain TFI B33KA	712401	0	472	5752	SEQF1944	N/A					
021	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	vestibularis	Named	Oral			AY188353	61	0.17	106		1343	20	491	7053	SEQF1705|SEQF2004	N/A					
022	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Burkholderiaceae	Lautropia	mirabilis	Named	Oral			AY005030|X73223	138	0.40	50		47671	7	191	5330	SEQF1967	N/A					
023	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Comamonadaceae	Delftia	acidovorans	Named	Unassigned			AB020186	4	0.01	365	Comamonas acidivorans|Comamonas acidovorans|Pseudomonas acidovorans|Pseudomonas desmolytica|Pseudomonas indoloxidans	80866	121	694	44640	SEQF1413|SEQF2536|SEQF2537|SEQF2709	N/A					
024	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Comamonadaceae	Schlegelella	thermodepolymerans	Named	Unassigned		DSM 15264	AF125876	0	0.00	0	dehydroabietic acid-degrading bacterium DhA-71	215580	0	0	0		N/A					
025	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Comamonadaceae	Leptothrix	sp. HMT 025	Phylotype	Unassigned			AF385528	11	0.03	267	Oral Clone AV011a	712353	0	11	0		N/A					
026	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Comamonadaceae	Schlegelella	aquatica	Named	Unassigned		LMG 23380	AF385538	9	0.03	294	Oral Clone CA004	376175	0	9	0		N/A					
027	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Burkholderiaceae	Cupriavidus	gilardii	Named	Unassigned			AY005039	0	0.00	0	Strain TFI C37KA	82541	0	0	0	SEQF2854	N/A					
028	Bacteria	Proteobacteria	Betaproteobacteria	Rhodocyclales	Rhodocyclaceae	Rhodocyclus	sp. HMT 028	Unnamed	Unassigned			AY005031	14	0.04	236	Strain TFI A08KA	712523	0	14	0		N/A					
029	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	vincentii	Named	Oral			AF033309	5	0.01	343		69710	59	207	9551	SEQF1610|SEQF1947	N/A					
030	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	afermentans	Named	Unassigned												SEQF2886						
031	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	amycolatum	Named	Unassigned												SEQF2910|SEQF2942|SEQF2949|SEQF2951|SEQF2956|SEQF2964|SEQF2967|SEQF2975|SEQF2979|SEQF2992|SEQF2995|SEQF2996|SEQF3006|SEQF3012|SEQF3013|SEQF3014|SEQF3015|SEQF3017|SEQF3020|SEQF3024|SEQF3028|SEQF3031|SEQF3033|SEQF3034|SEQF3037						
032	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	sp. HMT 032	Phylotype	Unassigned			AF385547	8	0.02	309	Oral Clone AZ002	712508	0	8	0		N/A					
033	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	appendicis	Named	Unassigned												SEQF2915						
034	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	aurimucosum	Named	Unassigned												SEQF2903|SEQF2936|SEQF2938|SEQF2939|SEQF2944|SEQF2948|SEQF2950|SEQF2971|SEQF2981|SEQF2989|SEQF2991|SEQF3001|SEQF3009|SEQF3010|SEQF3019|SEQF3032|SEQF3042|SEQF3043|SEQF3045|SEQF3046|SEQF3048						
035	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	paraphrohaemolyticus	Named	Oral		NCTC 10670	AY005034	11	0.03	267	Oral Clone BJ021	736	0	11	0	SEQF2918	N/A					
036	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	sp. HMT 036	Unnamed	Oral			AY005033	110	0.32	64	Clone BJ095|Strain P7A_FAAD5|Strain W6487	712310	0	110	0	SEQF2869	N/A					
037	Bacteria	Proteobacteria	Gammaproteobacteria	Xanthomonadales	Xanthomonadaceae	Stenotrophomonas	nitritireducens	Named	Unassigned		ATCC BAA-12	AF385546	82	0.24	86	Oral Clone AY088	83617	0	82	0	SEQF2800|SEQF2803	N/A					
038	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Atopobiaceae	Olsenella	uli	Named	Oral			AF292373	14	0.04	236	Atopobium uli|Lactobacillus uli	133926	19	43	7180	SEQF1031|SEQF2631	N/A					
039	Bacteria	Proteobacteria	Deltaproteobacteria	Bdellovibrionales	Bdellovibrionaceae	Bdellovibrio	sp. HMT 039	Phylotype	Unassigned			AF385539	1	0.00	459	Oral Clone CA006	712185	0	1	0		N/A					
040	Bacteria	Proteobacteria	Deltaproteobacteria	Desulfovibrionales	Desulfovibrionaceae	Desulfovibrio	sp. HMT 040	Phylotype	Unassigned			AY005035	3	0.01	387	Oral Clone BB161	712259	0	3	0		N/A					
041	Bacteria	Proteobacteria	Deltaproteobacteria	Desulfobacterales	Desulfobulbaceae	Desulfobulbus	sp. HMT 041	Phylotype	Oral			AY005037	32	0.09	158	Oral Clone R004	712258	0	875	0	SEQF2485|SEQF2486|SEQF2538|SEQF2548	N/A					
042	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Mogibacterium	timidum	Named	Oral			U13042	94	0.27	78	Eubacterium timidum	35519	9	133	1657	SEQF2630	N/A					
044	Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	sp. HMT 044	Phylotype	Oral			AY005038	6	0.02	332	Oral Clone BB120	712200	0	6	0		N/A					
045	Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae	Bacillus	clausii	Named	Unassigned			AJ297498|AB043853	12	0.03	255		79880	69	12897	17592	SEQF1170	N/A					
046	Bacteria	Firmicutes	Bacilli	Bacillales	Gemellaceae	Gemella	morbillorum	Named	Oral		ATCC 27824	L14327|Y13366	546	1.57	7	Diplococcus morbillorum|Peptostreptococcus morbillorum|Streptococcus morbillorum	29391	151	661	3184	SEQF2298	This species was formerly known as Streptococcus morbillorum but was moved to Gemella on the basis of phylogenetic analysis based on 16S rRNA sequence comparisons.	Facultative anaerobe producing small (	Gram positive cocci found in pairs or short chains. Weakly fermentative and generally unreactive in commonly used biochemical and physiological tests and thus difficult to definitively identify by phenotypic means; molecular identification is recommended [1].	Found in dental plaque, on the tongue and has been isolated from periodontal pockets in periodontitis and exudate from pericoronitis associated with erupting third molars	Although found as part of the normal microbiota of the mouth and gastrointestinal orogenital tracts, Gemella morbillorum is capable of causing a wide range of infections. Most of these can be attributed to spread via the bloodstream and thus infective endocarditis is the commonest. Other infections include meningitis, brain, liver and lung abscess, osteomyelitis and septic thrombophlebitis.	J Clin Microbiol. 1998 Apr;36(4):866-71[PID:9542900]
047	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	jeikeium	Named	Unassigned												SEQF2874|SEQF2978|SEQF3023						
048	Bacteria	Firmicutes	Bacilli	Bacillales	Paenibacillaceae	Paenibacillus	sp. HMT 048	Phylotype	Unassigned			AF385540	9	0.03	294	Oral Clone CA007	712417	0	9	0		N/A					
049	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	kroppenstedtii	Named	Unassigned												SEQF2862						
050	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	macginleyi	Named	Unassigned																		
051	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	vaginalis	Named	Oral			AY005048	87	0.25	83		1633	36	581	3736	SEQF1783	N/A					
052	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	sp. HMT 052	Lost	Unassigned			To be submitted	0	0.00	0	Strain TFI DoxG2	671212	0	1	0		N/A					
053	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	minutissimum	Named	Unassigned												SEQF2878|SEQF3047						
054	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	pilbarense	Named	Unassigned												SEQF2873|SEQF2969|SEQF2998|SEQF3000						
056	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sp. HMT 056	Unnamed	Oral			AF385545	30	0.09	164	Oral Clone AY020	712620	0	35	3861	SEQF1847|SEQF2773	N/A					
057	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sp. HMT 057	Lost	Oral			AF385550	22	0.06	188	Oral Clone BE024	712621	0	22	0		N/A					
058	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	oralis subsp. dentisani clade 058	Named	Oral			AY005042|AY005043|AY005044|AY278632	251	0.72	26	Oral Clone BW009|Oral Clone BM035|Streptococcus oralis subsp. dentisani|Oral Clone C3MLM097|Oral Clone CH016	712622	1	355	3580		2017-09-08 (TC) This species was suggested to merge with Streptococcus oralis subsp. dentisani (HOT398) based on the published genomic study by Jensen et. al. (2016). http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.001433.  However since the 16S rRNA sequences AY005042, AY005043, AY005044, AY278632 that represent HOT058 form a distinct clade significantly away from that of HOT398 on the 16S rRNA phylogenetic tree, these sequences may represent a distinct strain for the species. We retained this HOT but changed the name to "Streptococcus oralis subsp. dentisani clade 058" so that future sequencing study can distinguish these sequences from others of this species.  					
059	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	propinquum	Named	Nasal																		
060	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	pseudodiphtheriticum	Named	Nasal												SEQF2911|SEQF2972|SEQF2984|SEQF3041						
061	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sp. HMT 061	Lost	Oral			AF432131|AF432132	49	0.14	128	Oral Clone DN025|Oral Clone DP009	712623	0	49	0		N/A					
062	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	simulans	Named	Unassigned												SEQF2866|SEQF2952|SEQF2955|SEQF2961|SEQF2990|SEQF3002|SEQF3005|SEQF3029|SEQF3036						
063	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	singulare	Named	Unassigned												SEQF2846|SEQF3039						
064	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sp. HMT 064	Unnamed	Oral			AF385574|AY278609	460	1.32	12	Oral Clone C5MLM037|Oral Clone EK048	712624	0	460	0	SEQF2662|SEQF2905	N/A					
066	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sp. HMT 066	Unnamed	Oral			AF432135|AF481230	127	0.36	57	Oral Clone FN051|Oral Clone MCE7_144	712626	0	127	0	SEQF1889	N/A					
070	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	oralis subsp. tigurinus clade 070	Unnamed	Oral			AY005040	131	0.38	55	Hans strain 12A|Hans strain 7A	671226	0	132	0	SEQF1888	N/A					
071	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	oralis subsp. tigurinus clade 071	Named	Oral		ATCC 15914	AY278631|AY207064|AY207062|AY005041	189	0.54	37	Streptococcus tigurinus|Strain TFI H6	1077464	0	226	3150	SEQF1913|SEQF2312	2017-05-04 (TC) This species was renamed based on the published proposal by Jensen et. al. (2016). http://ijs.microbiologyresearch.org.ezp-prod1.hul.harvard.edu/content/journal/ijsem/10.1099/ijsem.0.001433					
072	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	striatum	Named	Unassigned												SEQF2859|SEQF2999|SEQF3044						
073	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	australis	Named	Oral		ATCC 700641	AF385525|AF184974	179	0.51	39		113107	8	371	6393	SEQF2020	N/A					
074	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sp. HMT 074	Lost	Oral			AF385526	54	0.15	118	Strain TFI T4-E3	712631	0	53	0		N/A					
075	Bacteria	Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	Ruminococcaceae [G-1]	bacterium HMT 075	Phylotype	Oral			AF287779	64	0.18	102	Oral Clone A035|Oral Clone F058	541000	0	0	0		N/A					
076	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	warneri	Named	Oral			L37603	3	0.01	387	Staphylococcus warnerii	1292	203	1200	20673	SEQF2442|SEQF1839|SEQF2208|SEQF2712|SEQF2713	N/A					
077	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	tuberculostearicum	Named	Unassigned												SEQF2882|SEQF2943|SEQF2977|SEQF2987|SEQF2993|SEQF2994|SEQF3030						
078	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Oribacterium	sp. HMT 078	Unnamed	Oral			AF287771	5	0.01	343	Oral Clone AO068|Strain F0190	652706	0	335	11275	SEQF1603|SEQF2448	N/A	A strain of this taxa has recent been isolated, F0190, but not yet characterized.				
080	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Butyrivibrio	sp. HMT 080	Phylotype	Oral			AF287772	4	0.01	365	Clone BB124	830	0	0	0		N/A					
081	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-7]	bacterium HMT 081	Unnamed	Oral			AF287764	3	0.01	387	Clone BB142	186804	0	0	0	SEQF2652	N/A					
082	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnoanaerobaculum	orale	Named	Oral		CCUG 60305|N1|DSM 24533	AF385552|HQ877677	15	0.04	228	 Lachnospiraceae bacterium oral taxon 082 str. F0431 | Lachnospiraceae sp. strain F0431| Lachnospiraceae [G-1] sp. oral taxon 082 | Clone BE088 	979627	1	2	0	SEQF1881	Recently named Lachnoanaerobaculum oral in paper "Lachnoanaerobaculum a new genus in Lachnospiraceae; characterization of Lachnoanaerobaculum umeaense gen. nov., sp. nov., isolated from human small intestine, Lachnoanaerobaculum orale gen. nov., sp. nov., isolated from saliva and reclassification of Eubacterium saburreum (Prevot) Holdeman and Moore 1970 as Lachnoanaerobaculum saburreum comb. nov". PMID: 22228654.  The genome for this strain is available as Lachnospiraceae bacterium oral taxon 082 str. F0431 AGRL00000000.  The name change is not yet refledted for the genome at NCBI (11-02-2012).					
083	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnoanaerobaculum	sp. HMT 083	Phylotype	Oral			AF385557|AF385562	3	0.01	387	Clone BR088|Clone BS091	1164882	0	0	0	SEQF2858|SEQF2917	N/A					
084	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Micrococcaceae	Kocuria	palustris	Named	Unassigned												SEQF2861						
085	Bacteria	Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	Ruminococcaceae [G-2]	bacterium HMT 085	Phylotype	Oral			AF385563	24	0.07	181	Oral Clone BU014	541000	0	0	0		N/A					
086	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnospiraceae [G-7]	bacterium HMT 086	Phylotype	Oral			AF385567	4	0.01	365	Oral Clone BU061	186803	0	0	0		N/A					
087	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Micrococcaceae	Micrococcus	luteus	Named	Unassigned												SEQF2897						
088	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnospiraceae [G-2]	bacterium HMT 088	Phylotype	Oral			AF287775	1	0.00	459		186803	0	0	0		N/A					
089	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnoanaerobaculum	sp. HMT 089	Phylotype	Unassigned			AF287776	2	0.01	409	Oral Clone CK004	1164882	0	0	0		N/A					
090	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Butyrivibrio	sp. HMT 090	Phylotype	Unassigned			AF287773	1	0.00	459	Oral Clone CK030	830	0	0	0		N/A					
091	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-2]	bacterium HMT 091	Phylotype	Oral			AF287762	5	0.01	343	Oral Clone CK047	186804	0	0	0		N/A					
092	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	weaveri	Named	Oral			L10738	0	0.00	0	CDC group M-5	28091	10	221	7615	SEQF2330|SEQF2331	N/A					
093	Bacteria	Firmicutes	Clostridia	Clostridiales	Clostridiales [F-1]	Clostridiales [F-1][G-1]	bacterium HMT 093	Phylotype	Oral			AF481213	10	0.03	280	Oral Clone CK059|Oral Clone MCE7_107	186802	0	0	0		N/A					
094	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnospiraceae [G-10]	bacterium HMT 094	Phylotype	Unassigned			AF287768	2	0.01	409	Oral Clone DA074	186803	0	2	0		N/A					
095	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Shuttleworthia	satelles	Named	Oral			AF385507|AF385570|AF399956	76	0.22	91		177972	4	104	4486	SEQF1045	N/A					
096	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnospiraceae [G-2]	bacterium HMT 096	Unnamed	Oral			AF385508	20	0.06	198	DO008	186803	0	0	0	SEQF2649	N/A					
097	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Stomatobaculum	sp. HMT 097	Unnamed	Oral			AF385510	10	0.03	280	Oral Clone DO016	1213720	0	0	0		N/A					
098	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Moraxella	nonliquefaciens	Named	Nasal												SEQF2900|SEQF2947						
099	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	macacae	Named	Unassigned												SEQF2876						
100	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnospiraceae [G-3]	bacterium HMT 100	Phylotype	Oral			AF385573	58	0.17	112	Oral Clone EI074	186803	0	0	0		N/A					
101	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	perflava	Named	Unassigned												SEQF2927						
102	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Oribacterium	sp. HMT 102	Unnamed	Oral			AF481218	16	0.05	224	Oral Clone FB046|Oral Clone MCE7_60	671214	0	17	0	SEQF2358	N/A					
103	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-4]	bacterium HMT 103	Phylotype	Oral			AJ012604	11	0.03	267	Oral Clone PUS9.170	186804	0	0	0		N/A					
104	Bacteria	Proteobacteria	Alphaproteobacteria	Rhodobacterales	Rhodobacteraceae	Paracoccus	yeei	Named	Unassigned												SEQF2867						
105	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-1]	[Eubacterium] infirmum	Named	Oral		NCTC 12940	AF287761|U13039	57	0.16	113	Oral strain W 1417	186804	0	0	0	SEQF1695|SEQF1108	Eubacterium infirmum belongs to a phylogenetic cluster distant from Eubacterium limosum, the type species of the genus and is therefore not a member of Eubacterium sensu stricto. Along with many other members of this poorly-defined genus, E. infirmum will be assigned to a novel genus in due course.	Slow growth on Fastidious Anaerobe Agar + 5% horse blood plates. After 7 days, colonies are approximately 1 mm in diameter, circular, convex and translucent.	Cells are obligately anaerobic, non-spore-forming, nonmotile, Gram-positive, short rods (0.5 µm by 1-2 µm) [1]. Cells occur singly. Asaccharolytic. End-products of metabolism are moderate amounts of acetate and butyrate. The mol% G+C of the DNA is 38.	Found in the human mouth	Isolated from subgingival plaque in periodontitis.	Int J Syst Bacteriol. 1996 Oct;46(4):957-9[PID:8863423]
106	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-7]	[Eubacterium] yurii subsp. schtitka	Named	Oral			AF287765	2	0.01	409	Oral Strain TFI A3MT|Eubacterium yurii	186804	0	0	0		N/A					
107	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnoanaerobaculum	umeaense	Named	Oral			AF287777|FJ796700|FJ577253	54	0.15	118	  Oral Strain C27KA |   Oral Strain F0167| Lachnospiraceae [G-1] sp. oral taxon 107 |Lachnospiraceae bacterium oral taxon 107 	617123	1	2	0	SEQF1478	Lachnospiraceae bacterium Oral taxon 107 strain F0167 has been isolated from a human subject by the Moore's Laboratory in March 1988. The subject was a 14 year old American white male. The bacteria was isolated from the subgingival oral biofilm. The bacteria was grown in anaerobic conditions. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577253. The strain is available at www.bei.org under the reference HM-7. The genome of this strain is available as ADDS00000000.  Recently named Lachnoanaerobaculum umeaense in "Lachnospiraceae; characterization of Lachnoanaerobaculum umeaense gen. nov., sp. nov., isolated from human small intestine, Lachnoanaerobaculum orale gen. nov., sp. nov., isolated from saliva and reclassification of Eubacterium saburreum (Prevot) Holdeman and Moore 1970 as Lachnoanaerobaculum saburreum comb. nov". PMID: 22228654.   The name change is not yet refledted for the genome at NCBI (11-02-2012).					
108	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Oribacterium	asaccharolyticum	Named	Oral		ACB7	AF287770	22	0.06	188	Oral Strain TFI FTB41	1501332	0	27	4384	SEQF1854	N/A					
109	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilus	harei	Named	Unassigned												SEQF2888|SEQF2960|SEQF3035						
110	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Parvimonas	sp. HMT 110	Unnamed	Oral			AF287767|AY349390	54	0.15	118	Oral Clone AJ062|Oral Clone FJ023|Oral Clone HE064	671230	0	62	3209	SEQF1676	N/A					
111	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Parvimonas	micra	Named	Oral		ATCC 33270	AF385559|AF385543	237	0.68	27	Diplococcus glycinophilus|Micromonas micros|Peptococcus glycinophilus|Peptostreptococcus micros|Streptococcus anaerobius|Streptococcus micros	33033	103	431	4480	SEQF1029|SEQF2608	This species is known to be heterogeneous with micro-variation among 16S rRNA sequences, including between operons within strains and phenotypic variation including colonial appearance [1].	Colonies on horse blood agar are around 1 mm in diameter, circular, entire, opaque white or translucent gray and may be smooth or rough after 4 days anaerobic incubation.	Small (0.3 -0.7 micron diameter) Gram-positive cocci occurring in pairs and short chains [2]. Obligate anaerobe. Strains are asaccharolytic and the end-products of metabolism are primarily acetate with small amounts of lactate and sometimes succinate produced. The mol % G+C content of the DNA is 27-28. 	Parvimonas micra is a commonly found oral species and is isolated from dental plaque and the tongue in health and a variety of oral disease associated microbiota including periodontitis, endodontic and dentoalveolar infections, pericoronitis and advanced dental caries.	Has been isolated from most types of oral infection. Is a particularly frequent isolate from acute dentoalveolar infections where it is often a member of the 15-20 species consortium associated with the condition. Has also been isolated from clinical specimens obtained from infections at other body sites, primarily soft-tissue abscesses and bite wounds. These are primarily at sites above the diaphragm suggesting that the mouth is the primary habitat.	Int J Syst Bacteriol. 1993 Oct;43(4):787-93[PID:8240959]| Bergeys Manual of Systematic Bacteriology 1986; Vol. 2, pp. 1090-1091.
112	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcus	stomatis	Named	Oral			AF287763|DQ160208	191	0.55	36	Oral Clone CK035|Oral Strain TFI A21H2	341694	7	345	3186	SEQF1393	N/A					
113	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilaceae [G-1]	bacterium HMT 113	Unnamed	Oral			AF287766	18	0.05	211	Oral Clone DA014	1570339	0	0	0	SEQF2443	N/A					
114	Bacteria	Actinobacteria	Actinobacteria	Propionibacteriales	Propionibacteriaceae	Cutibacterium	granulosum	Named	Unassigned							Propionibacterium granulosum|Corynebacterium granulosum					SEQF2902						
115	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Yersiniaceae	Serratia	marcescens	Named	Unassigned												SEQF2889						
116	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	capitis	Named	Unassigned												SEQF2881						
117	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	cohnii	Named	Unassigned												SEQF2860						
118	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Dialister	invisus	Named	Oral			AF287787|AF287788	460	1.32	12	Oral Clone BS095|Oral Strain GBA27	218538	24	494	3724	SEQF1103	N/A					
119	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Dialister	sp. HMT 119	Phylotype	Oral			AF287786|AF481210	15	0.04	228	Oral Clone BS016|Oral Clone MCE7_134	712261	0	15	0		N/A					
120	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	haemolyticus	Named	Unassigned												SEQF2892						
121	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Anaeroglobus	geminatus	Named	Oral			AF287783	155	0.44	47	Oral Clone BB166	156456	3	378	4290	SEQF1880	N/A					
122	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Megasphaera	micronuciformis	Named	Oral			AF385566|AY278622	114	0.33	62	Oral Clone BU057|Oral Strain P4A_FAAD16	187326	2	253	3539	SEQF1685	N/A					
123	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Megasphaera	sp. HMT 123	Phylotype	Oral			AF287784	43	0.12	140	Oral Clone CS025	712374	0	43	0		N/A					
124	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	artemidis	Named	Oral			AF287797	56	0.16	114		671224	5	269	5483	SEQF1697|SEQF2584	N/A					
125	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	flueggei	Named	Oral			AF287803|AF287804	23	0.07	183	Oral Clone AH132	135080	3	80	4118	SEQF1616	N/A					
126	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 126	Unnamed	Oral			AF287800|AF385576	14	0.04	236	Oral Clone AJ036|Oral Clone EY047	712528	0	14	0	SEQF2656|SEQF2805	N/A					
127	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	hominis	Named	Unassigned												SEQF2901						
128	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	lugdunensis	Named	Unassigned												SEQF2909						
129	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonellaceae [G-1]	bacterium HMT 129	Lost	Oral			To be submitted	21	0.06	192	Oral Clone AU096|Oral Strain TFI FNA3	31977	0	0	0		N/A					
130	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	noxia	Named	Oral			AF287798|AF287799|AF385495	361	1.04	17		135083	25	523	7495	SEQF1593|SEQF1690	N/A					
131	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Mitsuokella	sp. HMT 131	Unnamed	Oral			AF287795|AY278627	167	0.48	42	Oral Clone C5AKM062|Oral Clone CS002	1321780	0	86	4615	SEQF2446	N/A					
132	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonellaceae [G-1]	bacterium HMT 132	Phylotype	Oral			AF287791	32	0.09	158	Oral Clone CS015	31977	0	0	0		N/A					
133	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 133	Unnamed	Oral			AF287796	10	0.03	280	Oral Clone CS024	712529	0	10	0	SEQF1890	N/A					
134	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 134	Phylotype	Oral			AF287794	11	0.03	267	Oral Clone DD020	712530	0	11	0		N/A					
135	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonellaceae [G-1]	bacterium HMT 135	Phylotype	Oral			AF287790	9	0.03	294	Oral Clone DM071	31977	0	0	0		N/A					
136	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 136	Unnamed	Oral			AF385514	3	0.01	387	Oral Clone DO042	713030	0	3	0	SEQF2791	N/A					
137	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 137	Unnamed	Oral			AF366273	19	0.05	205	Oral Clone DS051	712531	0	52	4150	SEQF1858	N/A					
138	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 138	Unnamed	Oral			AF366274	20	0.06	198	Oral Clone DS071	712532	0	207	4694	SEQF1951	N/A					
139	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	dianae	Named	Oral			AF385492|AF385501|AF287801	105	0.30	71	Oral Clone DY027|Oral Clone EW076|Oral Clone Z048	135079	3	108	0	SEQF2309	N/A					
141	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	pasteuri	Named	Unassigned												SEQF2849						
142	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	pettenkoferi	Named	Unassigned												SEQF2895						
145	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonellaceae [G-1]	bacterium HMT 145	Phylotype	Oral			AF385502	28	0.08	171	Oral Clone EW079	31977	0	0	0		N/A	This organism is know from the sequence of clones from human oral 16S rRNA libraries.  An isolate has not yet been identified for this taxon. Therefore, it is as yet uncultivated.  				
146	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 146	Lost	Oral			AF385503	7	0.02	320	Oral Clone EW084	712534	0	7	0		N/A					
148	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonellaceae [G-1]	bacterium HMT 148	Phylotype	Unassigned		None--not yet cultivated	AF385578	10	0.03	280	Oral Clones EZ011	31977	0	0	0		N/A					
149	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 149	Unnamed	Oral			AY349403	49	0.14	128	Oral Clone FT050	712535	0	139	4692	SEQF1914	N/A					
150	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonellaceae [G-1]	bacterium HMT 150	Phylotype	Oral			AY207052	30	0.09	164	Oral Clone K024|Oral Clone P2PA_80	31977	0	0	0		N/A					
151	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sputigena	Named	Oral			AF287793	305	0.87	21	Spirillum sputigenum|Vibrio sputigenus	69823	43	404	10310	SEQF1598	N/A					
152	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	thermophilus	Named	Unassigned												SEQF2891						
153	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Klebsiella	aerogenes	Named	Unassigned												SEQF2847						
154	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Moraxella	lincolnii	Named	Nasal												SEQF2870						
155	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonellaceae [G-1]	bacterium HMT 155	Lost	Oral			AF287789|AY278628	115	0.33	59	Oral Strain GAA14 [2]|Selenomonas genomosp. C2 [1]	31977	0	0	0	SEQF1686	N/A					J Clin Microbiol. 2004 Jul;42(7):3023-9[PID:15243054]|J Bacteriol. 2001 Jun;183(12):3770-83[PID:11371542]
158	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonella	rogosae	Named	Oral		DSM 18960|CCUG 54233|CF100	EF108443|GQ422725	39	0.11	146	 Oral Strain F0412 |Oral Clone BI029 |  Veillonella sp. oral taxon 158	423477	5	12	4	SEQF1698	Veillonella sp. oral taxon 158 strain F0412 was identified as Veillonella rogosae through 99.9% similarity of the rpoB gene to that of the type strain CF100.  16S rRNA genes also agree, but Beighton's six 16S rRNA V. rogosae reference sequences are unfortunately short and un-informative.  The genome for strain F0412 available as AENU00000000.  The genome link above may be unavailable until the genome sequence is renamed from Veillonella sp. oral taxon 158 to Veillonella rogosae at NCBI.  (11/01/2012)					
160	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonella	dispar	Named	Oral			X84006	848	2.43	5	Veillonella alcalescens	39778	47	1520	6507	SEQF1159|SEQF2633	N/A					
161	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonella	parvula	Named	Oral		ATCC 10790	AF366266|AF287782|AF287781|X84005	2305	6.61	1	Micrococcus gazogenes|Micrococcus lactilyticus|Veillonella gazogenes|Staphylococcus parvulus|Veillonella alcalescens	29466	235	2501	15254	SEQF1058|SEQF2364|SEQF2244|SEQF1496|SEQF2564	Type species of the genus.  Phylogentically indistinguishable to V. dispar.  	Nonhemolytic o­n Blood agar.  Distinctive colony (1-3 mm) morphology, e.g., lens-, diamond- or heart-shaped, when grown o­n lactate agar media.   Smooth, entire and grayish white in appearance. [7]	Anaerobic, Gram negative coccus (~0.4 um in diameter), usually in pairs.    Lactate, pyruvate, malate, fumarate and oxaloacetate can be fermented, however carbohydrates are not.   CO2 is required for growth.  Lactate is fermented to acetate, propionate, CO2, and H2. G+C content is38 to 41 mol%.[7]Phylogenetically similar to V. dispar, however V. parvula is catalase negative whereas V. dispar is catalase positive.  They can also be differentiated serologically and by DNA/DNA homology (28%).Resistant to streptomycin and vancomycin, which can be used in media for selective enrichment of species of Veillonella.	Commonly detected in the human oral cavity and intestinal tract.  Prevalent o­n all oral surfaces [4] and in supragingival and subgingival plaque [4,5,6]	Veillonella parvula tend to be more prevalent in sites without disease, however it has been associated with discitis [3], tonsillitis, spinal osteomyelitis, sepsis, endodontic lesions [1], and coronary heart disease [2]	J Clin Microbiol. 2005 Nov;43(11):5721-32[PID:16272510]|J Clin Microbiol. 2002 Mar;40(3):1001-9[PID:11880430]|J Clin Periodontol. 1998 Feb;25(2):134-44[PID:9495612]|Bergey's Manual of Systematic Bacteriology 1984; Vol. 1, pp. 681-683.|Oral Microbiol Immunol. 2007 Dec;22(6):390-7[PID:17949342]|Circulation. 2005 Jul 5;112(1):19-24[PID:15983248]|J Clin Microbiol. 2007 Feb;45(2):672-4[PID:17108070]
163	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnospiraceae [G-7]	bacterium HMT 163	Phylotype	Oral			AF287769	2	0.01	409	Oral Clone AH153	186803	0	0	0		N/A					
164	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Catonella	sp. HMT 164	Phylotype	Oral			AF385556	10	0.03	280	Oral Clone BR063	712233	0	10	0		N/A					
165	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Catonella	morbi	Named	Oral			AF385577|DQ003629|X87151	92	0.26	79	Oral Clone EZ006|Oral Clone MB5_P12	43997	5	140	6556	SEQF1596	N/A					
166	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Johnsonella	sp. HMT 166	Phylotype	Oral			AF287774	11	0.03	267	Oral Clone CK051	712318	0	11	0		N/A					
167	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptococcaceae	Peptococcus	sp. HMT 167	Lost	Oral			AF481224	17	0.05	218	Oral Clone MCE10_265|Oral StrainsGEA8	671215	0	18	0		N/A					
168	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptococcaceae	Peptococcus	sp. HMT 168	Phylotype	Oral			AF287780	2	0.01	409	Oral Clone I070	712426	0	2	0		N/A					
169	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 169	Unnamed	Oral			AF287747	61	0.17	106	Oral Clone AG004	712116	0	61	0	SEQF2359	N/A					
170	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 170	Unnamed	Oral			AF287749	36	0.10	149	Oral Clone AP064	712117	0	290	6014	SEQF1849	N/A					
171	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 171	Unnamed	Oral			AF385553|AY349367	73	0.21	95	Oral Clone BL008|Oral Clone JA063|Oral Strain W5536	706438	0	1216	6226	SEQF1693	N/A					
172	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 172	Unnamed	Oral			AF385504|AF385505	13	0.04	244	Oral Clone CT047|Oral Clone CT068	712118	0	738	4660	SEQF2430	N/A					
173	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriales [F-1]	Lawsonella	clevelandensis	Named	Skin												SEQF2877						
174	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseriaceae [G-1]	bacterium HMT 174	Phylotype	Nasal																		
175	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 175	Unnamed	Oral			AY008314	52	0.15	124	Oral Clone EP005	712119	0	69	5028	SEQF1848	N/A					
176	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	naeslundii	Named	Oral		JCM 8349|ATCC 12104|NCTC 10301	AB618790	79	0.23	88	Oral Clone EP011	1655	543	979	6152	SEQF2386|SEQF1063|SEQF1891	The Oral phylotypes 169, 170, 171, 175, 176, and 688 cluster together and all are probably members of the species Actinomyces naeslundii (a fuzzy group).  At this time, the Dewhirst laboratory has not examined whether strains classified as A. naeslundii genospecies 1 or 2 fall consistently into particular phylotypes in this cluster.  The taxonomy of this group is is discussed in the references [1-3].  Over the next year, we will be sequencing a number of actinomyces strains from the Moores' collection, and should be able to clarify these issues.There is a vast literature o­n Actinomyces naeslundii which we will not attempt to review here.	Easily cultivatedMoores' Collection included 34 isolates	Gram positive, non-motile bacillusFacultative anaerobe	Common member of dental plaque	Appears to contribute to periodontal disease.  Can be invasive and cause actinomycotic infections throughout the body.  	J Dent Res. 1993 Oct;72(10):1374-85[PID:8408879]|Int J Syst Bacteriol. 1990 Jul;40(3):273-86[PID:2397195]|Int J Syst Bacteriol. 1997 Jan;47(1):46-53[PID:8995800]
178	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 178	Unnamed	Oral			AF287750	12	0.03	255	Oral Strain TFI B27SC	710238	0	442	4691	SEQF1666	N/A					
179	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	timonensis	Named	Oral			AF287748	0	0.00	0	OralsStrain TFI B19SC	1288391	2	52	2116	SEQF2594	N/A					
180	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 180	Unnamed	Oral			AF287751|AF385522	22	0.06	188	Oral Strain TFI C29KA|Oral Strain TFI Hal-1083	651609	0	82	4105	SEQF1647	N/A					
181	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	lingnae [Not Validly Published]	Named	Oral		CCUG 32865	AF385522	11	0.03	267	Oral Strain TFI Hal-1065	114702	0	75	3307	SEQF1948	Name not validly published.					
182	Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae	Anoxybacillus	flavithermus	Named	Unassigned												SEQF2850						
183	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Peptidiphaga	sp. HMT 183	Unnamed	Oral			AY008311|AY207066	21	0.06	192	Oral Clone EL030|Oral Strain P2P_19	712888	0	286	4640	SEQF2310|SEQF2755	N/A					
184	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	tuscaniense	Named	Unassigned		ATCC BBA-1141	AF287754	0	0.00	0	Oral Strain TFI A43SC	302449	0	0	0	SEQF2784	N/A					
185	Bacteria	Actinobacteria	Actinobacteria	Micrococcales	Microbacteriaceae	Microbacterium	ginsengisoli	Named	Unassigned		DSM 18659	AF385527	2	0.01	409	Oral Clone AV005b	400772	0	2	0	SEQF2785	N/A					
186	Bacteria	Actinobacteria	Actinobacteria	Micrococcales	Microbacteriaceae	Microbacterium	flavescens	Named	Unassigned		ATCC 13348	AF287752	1	0.00	459	Oral Strain TFI C24KA	69366	0	30	5239	SEQF1971	N/A					
187	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilus	sp. HMT 187	Unnamed	Unassigned												SEQF2872|SEQF2963						
188	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Micrococcaceae	Rothia	aeria	Named	Oral			Y13025	21	0.06	192	Oral Clone AP005|Oral Strain TFI-B37KA|Oral Strain TFI-F0184	172042	14	284	9219	SEQF1901|SEQF1688	N/A					
189	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Micrococcaceae	Kocuria	sp. HMT 189	Phylotype	Unassigned			AF385532	2	0.01	409	Oral Clone AW006	712329	0	2	0		N/A					
190	Bacteria	Actinobacteria	Actinobacteria	Micrococcales	Intrasporangiaceae	Arsenicicoccus	bolidensis	Named	Unassigned		CCUG 47306	AF287753	0	0.00	0	Oral Strain TFI-B46KS	229480	0	0	0	SEQF2648|SEQF2746	N/A					
191	Bacteria	Actinobacteria	Actinobacteria	Propionibacteriales	Propionibacteriaceae	Acidipropionibacterium	acidifaciens	Named	Oral			AF287756	159	0.46	44	Oral Strain TFI-FMA5	1410036	4	1014	7138	SEQF1851|SEQF2583	N/A					
192	Bacteria	Actinobacteria	Actinobacteria	Propionibacteriales	Propionibacteriaceae	Propionibacteriaceae [G-2]	bacterium HMT 192	Unnamed	Unassigned			To be submitted	0	0.00	0	Oral Strain TFI-C03KA	31957	0	22	5040	SEQF1972	N/A					
193	Bacteria	Actinobacteria	Actinobacteria	Propionibacteriales	Propionibacteriaceae	Cutibacterium	sp. HMT 193	Unnamed	Unassigned			To be submitted	1	0.00	459	Oral Strain TFI-MetC3	671223	0	2	0	SEQF2808	N/A					
194	Bacteria	Actinobacteria	Actinobacteria	Propionibacteriales	Propionibacteriaceae	Pseudopropionibacterium	sp. HMT 194	Phylotype	Oral			AF287757	1	0.00	459	Oral Clone BN085	712503	0	1	0		N/A					
195	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Scardovia	wiggsiae	Named	Oral			AF287758|AY278626	23	0.07	183	Scardovia ge|Oral Clone CX010|Oral Strain KCL-W5934|Oral Strain TFI-A32ED	230143	4	31	2717	SEQF1853	N/A					
196	Bacteria	Proteobacteria	Alphaproteobacteria	Rhodospirillales	Rhodospirillales [F-1]	Enhydrobacter	aerosaccus	Named	Unassigned												SEQF2845						
197	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Micrococcaceae	Kocuria	rhizophila	Named	Unassigned												SEQF2871						
198	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Alloscardovia	omnicolens	Named	Oral		CCUG 31649	NR_042583	0	0.00	0	Oral Strain TFI-Hal-H6-M4	419015	6	191	4347	SEQF2451|SEQF2547	N/A					
199	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Coriobacteriaceae	Atopobium	sp. HMT 199	Unnamed	Oral			AF287760	1	0.00	459	Oral Clone C019	712156	0	12	2934	SEQF1949	N/A					
200	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	nucleatum subsp. vincentii	Named	Oral			AF287806|AF287810|AF287805|NZ_AABF02000026	469	1.34	11	Oral Clone AJ050|Oral Clone CZ006|Oral Clone R002	155615	5	1629	12658	SEQF1076|SEQF2818|SEQF2819|SEQF2820|SEQF2980	Note: This cluster of sequences includes the sequence for the type strain of Fusobacterium naviforme. The taxonomy and phylogeny of the Fusobacterium nucleatum subspecies and related Fusobacterium periodontium and Fusobacterium naviforme is not well defined. The 16S rRNA sequence information is probably not reliable for putting strains into valid Fusobacterium nucleatum subspecies.					
201	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	periodonticum	Named	Oral			AF432130|X55405	53	0.15	123	Oral Clone BS011	860	28	1380	18876	SEQF2406|SEQF1160|SEQF2529|SEQF2555	Note: The taxonomy and phylogeny of the Fusobacterium nucleatum subspecies and related Fusobacterium periodontium and Fusobacterium naviforme is not well defined. The 16S rRNA sequence information is probably not reliable for putting strains into valid Fusobacterium nucleatum subspecies.					
202	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	nucleatum subsp. polymorphum	Named	Oral			AF366265|AF287812	156	0.45	46	Oral Clone BS019	76857	7	114	4848	SEQF1680|SEQF1075|SEQF2812|SEQF2813|SEQF2814|SEQF3018|SEQF3025	Note: The taxonomy and phylogeny of the Fusobacterium nucleatum subspecies and related Fusobacterium periodontium and Fusobacterium naviforme is not well defined. The 16S rRNA sequence information is probably not reliable for putting strains into valid Fusobacterium nucleatum subspecies.					
203	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	sp. HMT 203	Unnamed	Oral			AF287809|AF287815	29	0.08	170	Oral Clone CY024|Oral Clone FV003|Oral Clone I035	671211	0	30	0	SEQF2657|SEQF2896|SEQF2985	N/A					
204	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	sp. HMT 204	Phylotype	Oral																		
205	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	sp. HMT 205	Phylotype	Oral			To be submitted	1	0.00	459	Oral Clone FL002	710237	0	2	0		N/A					
206	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Bergeyella	sp. HMT 206	Phylotype	Unassigned																		
207	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	sp. HMT 207	Unnamed	Unassigned												SEQF2851|SEQF3040|SEQF3049|SEQF3050						
208	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	bovis	Named	Unassigned												SEQF2924						
209	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Commamonadaceae	Acidovorax	ebreus	Named	Unassigned												SEQF2863						
211	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Commamonadaceae	Acidovorax	caeni	Named	Unassigned												SEQF2923						
212	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 212	Unnamed	Oral			AY008309	15	0.04	228	Oral Clone Bu064	712357	0	15	0	SEQF2748	N/A					
213	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	hongkongensis	Named	Oral		HKU24	EU919515|AF287811	12	0.03	255	Oral Clone DA065	554406	1	10	8		N/A					
214	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	shahii	Named	Oral			AF366268	8	0.02	309	Oral Clone DE081	157691	1	81	1815	SEQF2501	N/A					
215	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 215	Unnamed	Oral			AF385518	17	0.05	218	Oral Clone DR011	712359	0	222	4518	SEQF2444	N/A					
216	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Commamonadaceae	Acidovorax	temperans	Named	Unassigned												SEQF2893						
217	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 217	Phylotype	Oral			AF366276	2	0.01	409	Oral Clone DT031	712360	0	2	0		N/A					
218	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 218	Phylotype	Oral			AF385571	4	0.01	365	Oral Clone EI013	712361	0	4	0		N/A					
219	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 219	Phylotype	Oral			AF385572	9	0.03	294	Oral Clone EI022	652714	0	9	0		N/A					
221	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 221	Unnamed	Oral			AF432138	1	0.00	459	Oral Clone FP036	712362	0	1	0		N/A					
222	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	wadei	Named	Oral			AF287816	50	0.14	127	Leptotrichia wadeii|Oral Strain TFI-A39FD	157687	1	521	6197	SEQF1618|SEQF2502	N/A					
223	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 223	Phylotype	Oral			AF287814	2	0.01	409	Oral Clone F138	712363	0	2	0		N/A					
224	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	hofstadii	Named	Oral			AF287813	17	0.05	218	Oral Strain TFI-FAC5	157688	1	137	7569	SEQF1601|SEQF2581	N/A					
225	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 225	Unnamed	Oral			To be submitted	7	0.02	320	Oral Clone HE052|Oral Strain TFI-FEA2	671213	0	575	4634	SEQF2452	N/A					
226	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 226	Phylotype	Oral			AF023062	1	0.00	459	Oral Clone G054	712715	0	1	0		N/A					
227	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 227	Phylotype	Oral			AF056339	2	0.01	409	Oral Clone BA223	712716	0	2	0		N/A					
228	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 228	Phylotype	Oral			AF023054	25	0.07	180	Treponema sp. I:D:T31	712717	0	25	0		N/A					
229	Bacteria	Cyanobacteria	Oscillatoriophycideae	Oscillatoriophycideae	Oscillatoriales	Arthrospira	platensis	Named	Unassigned												SEQF2856						
230	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 230	Phylotype	Oral			AF023053|AY005081	13	0.04	244	Oral Clone AF068|Treponema sp. I:F:D13	712718	0	13	0		N/A					
231	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 231	Phylotype	Oral			AF023055	21	0.06	192	Treponeme sp. 1:G:T21	712719	0	21	0		N/A					
232	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 232	Phylotype	Unassigned			AF023059	28	0.08	171	Treponema sp. I:J:T19	712720	0	28	0		N/A					
233	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	schleiferi	Named	Unassigned												SEQF2914						
234	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 234	Phylotype	Oral			AF023056	10	0.03	280	Treponema sp. I:L:Y1	712721	0	10	0		N/A					
235	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 235	Phylotype	Oral			AF023063	3	0.01	387	Treponema sp. I:N:D47	712722	0	3	0		N/A					
236	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 236	Phylotype	Oral			AF056338	8	0.02	309	Treponema sp. I:O:AF016	712723	0	8	0		N/A					
237	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 237	Phylotype	Oral			AF061349|AF056337|AF061350	42	0.12	142	Treponema sp. I:8:G57|Treponema sp. I:S:AT39|Treponema sp. I:T:AT24	712724	0	42	0		N/A					
238	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 238	Phylotype	Oral			AF061347	9	0.03	294	Treponema sp. I:Q:AT20	712725	0	9	0		N/A					
239	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 239	Phylotype	Oral			AF061348|AY349416	11	0.03	267	Oral ClonesJU031|Treponema sp. I:R:AF026	712726	0	11	0		N/A					
241	Bacteria	Firmicutes	Bacilli	Bacillales	Listeriaceae	Brochothrix	thermosphacta	Named	Unassigned												SEQF2904						
242	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 242	Phylotype	Oral			AF182831	1	0.00	459	Treponema sp. I:V:AU076	712727	0	1	0		N/A					
243	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Jeotgalicoccus	huakuii	Named	Unassigned																		
244	Bacteria	Proteobacteria	Alphaproteobacteria	Rhodospirillales	Acetobacteraceae	Roseomonas	gilardii	Named	Unassigned												SEQF2908						
245	Bacteria	Proteobacteria	Alphaproteobacteria	Rhodospirillales	Acetobacteraceae	Roseomonas	mucosa	Named	Unassigned												SEQF2894						
246	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 246	Phylotype	Oral			AF023031	1	0.00	459	Treponema sp. II:C:T1	712728	0	1	0		N/A					
247	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 247	Phylotype	Oral			AF023032	27	0.08	176	Treponema sp. II:D:G93	712729	0	27	0		N/A					
248	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	sp. HMT 248	Unnamed	Unassigned												SEQF2868						
249	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 249	Phylotype	Unassigned			AF023037	1	0.00	459	Treponema sp. II:I:C53	712730	0	1	0		N/A					
250	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 250	Phylotype	Unassigned			AF023028	1	0.00	459	Treponema sp. III:A:D24	712731	0	1	0		N/A					
251	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 251	Phylotype	Unassigned			AF056340	14	0.04	236	Treponema sp. III:B:U8A	712732	0	14	0		N/A					
252	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 252	Phylotype	Oral			AF056341	2	0.01	409	Treponema sp. III:C:BA213	712733	0	2	0		N/A					
253	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 253	Phylotype	Oral			AF182838	6	0.02	332	Treponema sp. 3:D:BQ032	712734	0	5	0		N/A					
254	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 254	Phylotype	Oral			AF182836	9	0.03	294	Treponema sp. 3:E:AT013	712735	0	9	0		N/A					
256	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 256	Phylotype	Oral			AF182835	5	0.01	343	Treponema sp. 3:G:BB003	712737	0	5	0		N/A					
257	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 257	Lost	Oral			AF023044	17	0.05	218	Oral Strain Smibert D36ER1|Treponema sp. V:19:D36	712738	0	17	0		N/A					
258	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 258	Phylotype	Oral			AF023042	1	0.00	459	Treponema sp. IV:18:C9	712739	0	1	0		N/A					
259	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	sp. HMT 259	Phylotype	Unassigned																		
260	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 260	Phylotype	Unassigned			AF023041	1	0.00	459	Treponema sp. IV:17D:D31	712740	0	1	0		N/A					
261	Bacteria	Bacteroidetes	Chitinophagia	Chitinophagales	Chitinophagaceae	Segetibacter	aerophilus	Named	Unassigned																		
262	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 262	Phylotype	Oral			AF182834	3	0.01	387	Treponema sp. 5:C:AT040	712741	0	3	0		N/A					
263	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 263	Phylotype	Unassigned			AF182837	5	0.01	343	Treponema sp. 5:22:BH022	712742	0	5	0		N/A					
264	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 264	Phylotype	Unassigned			AF385536	7	0.02	320	Treponema sp. oral clone BZ013	712743	0	7	0		N/A					
265	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 265	Phylotype	Unassigned			AF023046	13	0.04	244	Treponema sp. V:A:U7A	712744	0	13	0		N/A					
266	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Comamonadaceae	Leptothrix	sp. HMT 266	Phylotype	Unassigned																		
268	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 268	Lost	Oral			AF033303|AY349418	8	0.02	309	Oral Clone IL034|Oral Strain Smibert D120CR-1|Treponema sp. Smibert-5	712745	0	8	0		N/A					
269	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 269	Lost	Oral			AY005083	0	0.00	0	Oral Strain Smibert D15A-4|Treponema sp. 6:H:D15A-4	157	0	0	0		N/A					
270	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 270	Phylotype	Oral				2	0.01	409	Treponema sp. 9:A:D01	671227	0	3	0		N/A					
271	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 271	Phylotype	Unassigned			AF023043	2	0.01	409	Treponema sp. 10:A:C25	712746	0	2	0		N/A					
272	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Bacteroidaceae	Bacteroidaceae [G-1]	bacterium HMT 272	Unnamed	Oral			AY005066	210	0.60	29	Oral Clone X083|Oral Strain TFI-F0093	815	0	0	0	SEQF1646	N/A					
273	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	endodontalis	Named	Oral			AY005067|AY005068	83	0.24	85	Bacteroides endodontalis|Oral Clone AJ002|Oral Clone BB134	28124	176	169	3928	SEQF1033	N/A					
274	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Bacteroidales [F-2]	Bacteroidales [G-2]	bacterium HMT 274	Unnamed	Oral			AY005072	51	0.15	125	Oral Clone AU126 [1-3]|Oral Strain KCL-W5603|Oral Strain TFI-F0058	171549	0	0	0	SEQF1451	Bacteroidetes bacterium Oral taxon 274 strain F0058 has been isolated from a human subject by the Moore's Laboratory in November 1984. The subject was a 39 year old American black male. The bacteria was isolated from the subgingival oral biofilm at a site with moderate periodontitis. The bacteria was grown in anaerobic conditions. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577256. The strain is available at www.bei.org under the reference HM-4. This strain is part of the reference strains for the oral section of the Human Microbiome Project. 		Presumptively Gram negativePresumptively anaerobic	26 clones found in libraries from 7 subjectsPresent in 20% of subgingival sites in healthy subjects and 76% of subgingival sites in periodontitis subjects with a prevalence ratio of 3.85 This disease association is higher than that of T. denticola, P. gingivalis or T. forsythensis [2]	Present in 20% of subgingival sites in healthy subjects and 76% of subgingival sites in periodontitis subjects with a prevalence ratio of 3.85 This disease association is higher thatn that of T. denticola, P. gingivalis or T. forsythensis [2]	Oral Dis. 2006 Jul;12(4):371-4[PID:16792721]|J Bacteriol. 2001 Jun;183(12):3770-83[PID:11371542]|J Dent Res. 2003 May;82(5):338-44[PID:12709498]
275	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	sp. HMT 275	Phylotype	Oral			AF393476	2	0.01	409	Oral Clone AW032	712435	0	2	0		N/A					
276	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Moraxella	sp. HMT 276	Phylotype	Unassigned																		
277	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	sp. HMT 277	Phylotype	Oral			AF385555	2	0.01	409	Oral Clone BR037	712436	0	2	0		N/A					
278	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	sp. HMT 278	Unnamed	Oral			AF385560	5	0.01	343	Oral Clone BS045	712437	0	206	3945	SEQF2357|SEQF2770	N/A					
279	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	pasteri	Named	Oral			AF385516|AY008310	42	0.12	142	Oral Clone CW034|Oral Clone DP023|Oral Strain TFI-F003	1583331	0	146	3447	SEQF1907	N/A					
280	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-3]	bacterium HMT 280	Phylotype	Oral			AY005071	10	0.03	280	Oral Clone DA064	1861803	0	0	0		N/A					
281	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-3]	bacterium HMT 281	Phylotype	Oral			AY005070	54	0.15	118	Oral Clone DA065	200643	0	0	0		N/A					
282	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter	junii	Named	Unassigned												SEQF2875						
283	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	catoniae	Named	Oral			AF366271|X82823	14	0.04	236	Oral Clone DS033|Oral Strain THI-F0035|Oribaculum catoniae	41976	6	130	5292	SEQF1936|SEQF2632	N/A					
284	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	sp. HMT 284	Lost	Oral			AY008313	5	0.01	343	Oral Clone EP003|Oral Strain TFI-F0037	712439	0	5	0		N/A					
285	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	sp. HMT 285	Phylotype	Oral			AY005069	0	0.00	0	Oral Clone F016	836	0	0	0		N/A					
286	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Tannerella	sp. HMT 286	Unnamed	Oral			AY008308	16	0.05	224	Oral Clone BU063	712710	0	5438	12966	SEQF2634|SEQF2635|SEQF2636|SEQF2637|SEQF2638|SEQF2807	As the closest Tannerella forsythus, several investigators have attempted to culture this organism--as yet unsuccessfully.					
288	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	oulorum	Named	Oral			L16472	13	0.04	244	Bacteroides oulorum|Oral Strain TFI-C08KA|Prevotella oulora	28136	3	420	6641	SEQF1691|SEQF2684	N/A					
289	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	maculosa	Named	Oral			AY005057|AY005058|EF534315	18	0.05	211	Oral Clone AA016|Oral Clone AA020|Oral Strain KCL-W1609|Prevotella genomosp.|Prevotella genomosp. T3 [1]	439703	1	560	7612	SEQF2147|SEQF2508|SEQF2680	N/A					Int J Syst Evol Microbiol. 2007 Dec;57(Pt 12):2936-9[PID:18048753]
290	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Anaerococcus	sp. HMT 290	Unnamed	Unassigned												SEQF2898						
291	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	denticola	Named	Oral			AY005053|AY005054	61	0.17	106	Oral Clone AO036|Oral Clone AH005|Bacteroides denticola	28129	44	667	13971	SEQF2146|SEQF1677|SEQF2563|SEQF2676|SEQF2733	N/A					
292	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 292	Phylotype	Oral			AY005060	13	0.04	244	Oral Clone AH125|Oral Clone AU120	671217	0	14	0		N/A					
293	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 293	Phylotype	Oral			AY005059	1	0.00	459	Oral Clone AO009	712453	0	1	0		N/A					
294	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Anaerococcus	sp. HMT 294	Phylotype	Unassigned																		
295	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Anaerococcus	sp. HMT 295	Phylotype	Unassigned																		
297	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter	johnsonii	Named	Unassigned												SEQF2916						
298	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	histicola	Named	Oral			AF385551	47	0.13	133	Oral Clone BE073	470565	2	205	6514	SEQF1852|SEQF2679	N/A					
299	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	nanceiensis	Named	Oral		CCUG 54409	AY005064	8	0.02	309	Oral Clone BI027|Oral Strain KCL-W1169|Oral Strain TFI-F0039	425941	0	13	5799	SEQF1452	Prevotella sp. oral taxon 299 strain F0039 has been isolated from a human subject by the Moore's Laboratory in September 1981.  The subject was a 44 years old American white male. The bacteria was isolated from the subgingival oral biofilm at an healthy site. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577257. The strain is available at www.bei.org under the reference HM-3.  This strain is now part of the reference strains for the oral section of the Human Microbiome Project. 					
300	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 300	Phylotype	Oral			AY278625|AF385554	18	0.05	211	Oral Clone BR014|Oral Clone C3MLM058	712456	0	18	0		N/A					
301	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 301	Phylotype	Oral			AF385558	1	0.00	459	Oral Clone BS041	712457	0	1	0		N/A					
302	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Alloprevotella	rava	Named	Oral		81/4-12|DSM 22548|CCUG 58091	AF385564	2	0.01	409	 Oral Strain F0020| Oral STain KCL-W6968 |Oral Clone BU035 | Prevotella sp. oral taxon 302	671218	1	141	3992	SEQF1671|SEQF1020|SEQF2754	Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae (Moore, Johnson & Moore, 1994) as Alloprevotella tannerae gen. nov., comb. nov.    PMID: 22753527.  Genome available as ACZK00000000.  Link to genome may be broken until name changed at NCBI from Prevotella sp. oral taxon 302 to Alloprevotella rava 					
303	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	pleuritidis	Named	Oral			AY005063|AY349392	21	0.06	192	Oral Clone CY006|Oral Clone FL019	407975	1	207	5773	SEQF1935	N/A					
304	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 304	Phylotype	Oral			AY005065	5	0.01	343	Oral Clone DA058	712459	0	5	0		N/A					
305	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 305	Phylotype	Oral			AF385509	1	0.00	459	Oral Clone DO014	712460	0	1	0		N/A					
306	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 306	Unnamed	Oral			AF385511	11	0.03	267	Oral Clone DO027	712461	0	161	4681	SEQF1887	N/A					
307	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	salivae	Named	Oral			AF385512	7	0.02	320	Oral Clone DO033	228604	6	436	10913	SEQF2149|SEQF1932	N/A					
308	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Alloprevotella	sp. HMT 308	Phylotype	Oral			AF385513	10	0.03	280	Oral Clone DO039	1283313	0	0	0		N/A					
309	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 309	Phylotype	Oral			AF385515	1	0.00	459	Oral Clone DO045	712463	0	1	0		N/A					
311	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	oris	Named	Oral			AY005056|L16474	153	0.44	48	Bacteroides oris|Oral Clone F045	28135	33	832	13678	SEQF2148|SEQF1656|SEQF2510|SEQF2683	N/A					
312	Bacteria	Firmicutes	Bacilli	Lactobacillales	Aerococcaceae	Aerococcus	viridans	Named	Unassigned												SEQF2883						
313	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 313	Unnamed	Oral			AF432133|AY349397	19	0.05	205	Oral Clone FM005|Oral Clone GI059	652722	0	19	0		N/A					
314	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 314	Unnamed	Oral			AY349393	16	0.05	224	Oral Clone FU048|Oral Strain TFI-F0054	712464	0	15	0	SEQF2316	N/A					
315	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 315	Phylotype	Oral			AY349394	2	0.01	409	Oral Clone FW035	712465	0	2	0		N/A					
316	Bacteria	Proteobacteria	Alphaproteobacteria	Rhodobacterales	Rhodobacteraceae	Haematobacter	missouriensis	Named	Unassigned												SEQF2853						
317	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 317	Unnamed	Oral			AY005061	66	0.19	100	Oral Strain TFI-B31FD|Oral Strain TFI-F0055	652721	0	395	5808	SEQF1477	Prevotella sp. Oral Taxon 317 strain F0108 has been isolated from a human subject by the Moore's Laboratory in April 1992. The subject was a 38 year old American black female. The bacteria was isolated from the subgingival oral biofilm at a healthy site. The bacteria was grown in anaerobic conditions. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577255. The strain is available at www.bei.org under the reference HM-5. This strain is part of the reference strains for the oral section of the Human Microbiome Project.					
318	Bacteria	Bacteroidetes	Sphingobacteriia	Sphingobacteriales	Sphingobacteriaceae	Pedobacter	sp. HMT 318	Phylotype	Unassigned			AF385531	2	0.01	409	Oral Clone AV100	84567	0	0	0		N/A					
319	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Bergeyella	sp. HMT 319	Phylotype	Unassigned			AF385544	9	0.03	294	Oral Clone AY017	712186	0	9	0		N/A					
320	Bacteria	Bacteroidetes	Chitinophagia	Chitinophagales	Chitinophagaceae	Flavitalea	sp. HMT 320	Phylotype	Unassigned			AF385548	2	0.01	409	Oral Clone AZ105	1210116	0	0	0		N/A					
321	Bacteria	Bacteroidetes	Sphingobacteriia	Sphingobacteriales	Sphingobacteriaceae	Pedobacter	sp. HMT 321	Phylotype	Unassigned			AF385549	3	0.01	387	Oral Clone AZ123	84567	0	0	0		N/A					
322	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Bergeyella	sp. HMT 322	Phylotype	Oral			AY008691	4	0.01	365	Oral Clone AK152	712187	0	4	0		N/A					
323	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 323	Unnamed	Oral			AY005077	0	0.00	0	Oral Strain TFI-A47ROY	1705617	0	0	0	SEQF2747	N/A					
324	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 324	Unnamed	Oral			AY005079	1	0.00	459	Oral Clone AA032	712211	0	298	4585	SEQF1938	N/A					
325	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	granulosa	Named	Oral			AY005074|U41347	344	0.99	18	Oral Clone AH015	45242	7	423	4714	SEQF1653	N/A					
326	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 326	Unnamed	Oral			AY005076	7	0.02	320	Oral Clone BB167|Oral Strain KCL-W5130	712212	0	505	6342	SEQF1900	N/A					
327	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseriaceae [G-1]	bacterium HMT 327	Phylotype	Unassigned																		
328	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	mastitidis	Named	Unassigned												SEQF2926						
329	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	leadbetteri	Named	Oral			AY005075|AF385569	39	0.11	146	Oral Clone BM058|Oral Clone BR085|Oral Clone BU084|Oral Strain TFI-F0087	327575	2	7	0	SEQF1684	N/A					
330	Bacteria	Proteobacteria	Alphaproteobacteria	Alphaproteobacteria [O-1]	Alphaproteobacteria [F-1]	Micavibrio	aeruginosavorus	Named	Unassigned												SEQF2848						
331	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	auricularis	Named	Unassigned												SEQF2934						
332	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 332	Unnamed	Oral			AF366270	2	0.01	409	Oral Clone DS022|Oral Strain KCL-W4070	712213	0	471	5395	SEQF1937	N/A					
333	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	massiliense	Named	Unassigned												SEQF2925						
334	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 334	Phylotype	Unassigned			AY008312	1	0.00	459	Oral Clone EL034	712214	0	1	0		N/A					
335	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 335	Unnamed	Oral			AY005078	2	0.01	409	Oral Clone X066	712215	0	80	3944	SEQF1906	N/A					
336	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 336	Unnamed	Oral			AY005080	7	0.02	320	Oral Clone X089	712216	0	55	4185	SEQF1970	N/A					
337	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	gingivalis	Named	Oral			AY005073	202	0.58	34		1017	81	296	5157	SEQF1602	N/A					
338	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 338	Unnamed	Oral			U41352	23	0.07	183	Oral Strain FDC-8	710239	0	158	4857	SEQF1687	N/A					
339	Bacteria	Actinobacteria	Actinobacteria	Micrococcales	Intrasporangiaceae	Janibacter	indicus	Named	Unassigned												SEQF2885						
340	Bacteria	Actinobacteria	Actinobacteria	Micrococcales	Brevibacteriaceae	Brevibacterium	paucivorans	Named	Unassigned																		
341	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	coyleae	Named	Unassigned												SEQF2907|SEQF2945|SEQF2957|SEQF2962|SEQF2968|SEQF3003|SEQF3004|SEQF3007|SEQF3008|SEQF3038						
342	Bacteria	Proteobacteria	Alphaproteobacteria	Sphingomonadales	Sphingomonadaceae	Novosphingobium	panipatense	Named	Unassigned												SEQF2928						
343	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Alcaligenaceae	Achromobacter	xylosoxidans	Named	Unassigned			Y14907	30	0.09	164	Alcaligenes xylosoxidans	85698	325	3185	81905	SEQF2029|SEQF2030|SEQF1926|SEQF2546|SEQF2610|SEQF2627	N/A					
344	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	luteola	Named	Unassigned												SEQF2931						
345	Bacteria	Absconditabacteria (SR1)	Absconditabacteria (SR1) [C-1]	Absconditabacteria (SR1) [O-1]	Absconditabacteria (SR1) [F-1]	Absconditabacteria (SR1) [G-1]	bacterium HMT 345	Phylotype	Oral			AF125207	7	0.02	320	Oral Clones X112	221235	0	0	0		The proposed phylum OP11 has been split into multiple phyla, including SR1.					
346	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-1]	bacterium HMT 346	Phylotype	Oral			AF125204	23	0.07	183	Oral Clone AH040	713049	0	0	0		N/A					
347	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-1]	bacterium HMT 347	Phylotype	Oral			AY005446	18	0.05	211	Oral Clone BE109	713050	0	0	0		N/A					
348	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-1]	bacterium HMT 348	Phylotype	Oral			GQ422738	4	0.01	365	Oral Clone BN036	671231	0	0	0	SEQF1467|SEQF1468|SEQF1469	N/A					
349	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-1]	bacterium HMT 349	Phylotype	Oral			AY005448	7	0.02	320	Oral Clone BS003	713051	0	0	0		N/A					
350	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-2]	bacterium HMT 350	Phylotype	Oral			AF385568	2	0.01	409	Oral Clone BU080	713052	0	0	0		N/A					
351	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-3]	bacterium HMT 351	Phylotype	Oral			AF385506	1	0.00	459	Oral Clone CW040	713053	0	0	0		N/A					
352	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-1]	bacterium HMT 352	Phylotype	Oral			AF385520	6	0.02	332	Oral Clone DR034	713054	0	0	0		N/A					
354	Bacteria	Actinobacteria	Actinobacteria	Micrococcales	Dermabacteraceae	Dermabacter	hominis	Named	Unassigned												SEQF2887						
355	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-4]	bacterium HMT 355	Phylotype	Oral			AF125205	1	0.00	459	Oral Clone F061	713056	0	0	0		N/A					
356	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-2]	Saccharibacteria (TM7) [G-5]	bacterium HMT 356	Phylotype	Oral			AF125206	1	0.00	459	Oral Clone I025	713057	0	0	0		N/A					
357	Bacteria	Synergistetes	Synergistia	Synergistales	Dethiosulfovibrionaceae	Pyramidobacter	piscolens	Named	Oral		W5455	EU309492|AY278615|AY005444	21	0.06	192	Oral Clone BA121|Oral Clone C2ALM009|Oral Strain W5455	638849	3	313	5512	SEQF1611|SEQF1474|SEQF1541|SEQF1475|SEQF2365	Belongs to the cultivable cluster of the phylum "Synergistetes" and related to Jonquetella anthropi [1].	After 7-day incubation on Fastidious Anaerobe Agar plates (incorporating 5 % horse blood), strains of this species form circular, entire, high convex colonies around 1 mm in diameter.	Gram-negative, obligately anaerobic, cocco-bacilli to short bacilli. Strains are asaccharolytic and generally biochemically unreactive although hydrogen sulphide is produced. Acetic and isovaleric acids and minor to trace amounts of propionic, isobutyric, succinic and phenyl-acetic acids are produced as end products of fermentation. The G + C content of the DNA of the type strain is 59 mol %. 	Found in the human mouth and vagina.	Has been isolated from dvanced dental caries, acute dentoalveolar infections and subgingival plaque in periodontitis.	Anaerobe. 2007 Jun-Aug;13(3-4):99-106[PID:17631395]
358	Bacteria	Synergistetes	Synergistia	Synergistales	Synergistaceae	Fretibacterium	sp. HMT 358	Phylotype	Oral			AY005445	27	0.08	176	Oral Clone BB062	1434006	0	0	0		N/A					
359	Bacteria	Synergistetes	Synergistia	Synergistales	Synergistaceae	Fretibacterium	sp. HMT 359	Phylotype	Oral			AY005447	12	0.03	255	Oral Clone BH007	1434006	0	0	0		N/A					
360	Bacteria	Synergistetes	Synergistia	Synergistales	Synergistaceae	Fretibacterium	sp. HMT 360	Phylotype	Oral			AF125199	66	0.19	100	Oral Clone BH017	1434006	0	0	0		N/A					
361	Bacteria	Synergistetes	Synergistia	Synergistales	Synergistaceae	Fretibacterium	sp. HMT 361	Phylotype	Oral			AF125201|AF481214|AY349372	7	0.02	320	Oral Clone D006|Oral Clone JV023|Oral Clone MCE7_5	1434006	0	0	0		N/A					
362	Bacteria	Synergistetes	Synergistia	Synergistales	Synergistaceae	Fretibacterium	sp. HMT 362	Phylotype	Oral			AF125200	12	0.03	255	Oral Clone D084	1431700	0	0	0		N/A					
363	Bacteria	Synergistetes	Synergistia	Synergistales	Synergistaceae	Fretibacterium	fastidiosum	Named	Oral		SGP1|DSM 25557|JCM 16858	AF125202|AF125203|AF481215	48	0.14	131	 Oral Clone W028 |Oral Clone MCE2_120 | Oral Clone W090| Strain SGP1	651822	4	4	4296	SEQF1674|SEQF2772	N/A					
365	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-3]	bacterium HMT 365	Phylotype	Oral			AF481206|DQ003626	20	0.06	198	Bacteroidales genomosp. P8|Oral Clone MB4_G15|Oral Clone MCE7_164	200643	0	0	0		N/A					
366	Bacteria	Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	Ruminococcaceae [G-3]	bacterium HMT 366	Phylotype	Unassigned			AF481208	2	0.01	409	Oral Clone MCE3_9	541000	0	0	0		N/A					
368	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Dietziaceae	Dietzia	cinnamea	Named	Unassigned		CCUG 50875	AF481211	9	0.03	294	Oral Strain KCL-W5195	321318	0	9	0	SEQF2654|SEQF2890	N/A					
369	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-4]	bacterium HMT 369	Phylotype	Oral			AF481212	24	0.07	181	Oral Clone MCE10_174	186804	0	0	0		N/A					
370	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	sp. HMT 370	Unnamed	Oral			AF481217	32	0.09	158	Oral Strain KCL-W5205	712288	0	587	4497	SEQF1879	N/A					
373	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Stomatobaculum	sp. HMT 373	Phylotype	Oral			AF481221	15	0.04	228	Oral Clone MCE9_173	1213720	0	0	0		N/A					J Dent Res. 2002 Nov;81(11):761-6[PID:12407091]
375	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilus	sp. HMT 375	Unnamed	Unassigned			AF481225	8	0.02	309	Oral Strain KCL-E3_32|Oral Strain KCL-W3886	712430	0	13	4228	SEQF1855	N/A					
376	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 376	Unnamed	Oral			AF481226	18	0.05	211	Oral Strain KCL-E7_34|Oral Strain KCL-W4029	712466	0	18	0	SEQF2354	N/A					
377	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-7]	[Eubacterium] yurii subsps. yurii & margaretiae	Named	Oral			L34629	40	0.11	144	Eubacterium yurii subsp. yurii|Eubacterium yurii subsp. margaratiae	186804	0	0	0	SEQF1912	Reference sequences for [Eubacterium] yurii subsps. yurii and margaratiae are >>99% identical by 16S rRNA and so given only one HOT-#.  					
378	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	micans	Named	Oral			AF481228	6	0.02	332	Prevotella sp. E7_56	189723	2	484	4513	SEQF1863|SEQF2509|SEQF2682	N/A					
380	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 380	Unnamed	Oral			AF538853	1	0.00	459	Oral Strain KCL-E7_56|Oral Strain KCL-W5098	712217	0	360	4454	SEQF1950	N/A					
381	Bacteria	Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	Ruminococcaceae [G-3]	bacterium HMT 381	Phylotype	Unassigned			AF538854	2	0.01	409	Oral Cone P4PB_122	541000	0	0	0		N/A					
382	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-8]	bacterium HMT 382	Phylotype	Unassigned			AF538855	0	0.00	0	Oral Clone P2PC_29	581174	0	0	0		N/A					
383	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-1]	bacterium HMT 383	Phylotype	Unassigned			AF538856	19	0.05	205	Oral Clone P2PB_46	186804	0	0	0		N/A					
386	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilus	sp. HMT 386	Unnamed	Unassigned			AF538859	4	0.01	365	Oral Clone P4PA_156|Oral Strain THI-F0131	652713	0	100	2796	SEQF1472	Peptoniphilus sp. Oral taxon 386 strain F0131 has been isolated from a human subject by the Moore's Laboratory in August 1978. The subject was a 54 year old American black female. The bacteria was isolated from the subgingival oral biofilm at a site with a moderate periodontitis. The bacteria was grown in anaerobic conditions. The partial 16S ribosomal RNA gene was deposited to GenBank under the reference FJ577254. The strain is available at www.bei.org under the reference HM-6. This strain is part of the reference strains for the oral section of the Human Microbiome Project.					
388	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 388	Phylotype	Unassigned			AF538861	3	0.01	387	Oral Clone P4PA_36	712536	0	3	0		N/A					
389	Bacteria	Firmicutes	Bacilli	Lactobacillales	Aerococcaceae	Abiotrophia	defectiva	Named	Oral		ATCC 49176	AY207063	236	0.68	28	Streptococcus defectivus	46125	74	308	3903	SEQF1595	Abiotrophia defectiva was originally named Streptococcus defectivus [6].  Fastidious streptococci that grew as satellite colonies around other microorganisms or in complex media enriched with cysteine were originally described as nutritionally variant streptococci (NVS) by Frenkel and Hirsch [7].  Kawamura et al. recognized that S. defectivus and other NVS were not members of the genus Streptococcus  and created the genus Abiotrophia [1] 	Requires 10 mg/l pyrixoxal hydrochloride or 100 mg/l L-cysteine for growth [1]	Gram-positive cocci.  Nonmotile, nonsporulating, catalase negative, and oxidase negative.  Facultatively anaerobic with complex growth requirements.  Grows as satellite colonies adjacent to Staphylococcus epidermidis [1].  	Abiotrophia defectiva is a common member of the human oral cavity, pharynx, intestine and urogenital tracts.  In a study examining the normal microflora of the oral cavity it was recovered from buccal, hard palate, tooth surface and subgingival sites [3].   	In a study of microbial risk indicators of early childhood caries, Abiotrophia defectiva was significantly more abundant in caries free vs caries active subjects [4].  The organism has also been associated with bacterial endocarditis [2,5]	Int J Syst Bacteriol. 1995 Oct;45(4):798-803[PID:7547302]|Int J Syst Bacteriol. 1989 Jul; 39(3):290-294|Intern Med. 2004 Oct;43(10):1000-4[PID:15575256]|J Clin Microbiol. 2005 Nov;43(11):5753-9[PID:16272513]|J Clin Microbiol. 2005 Nov;43(11):5721-32[PID:16272510]|J Clin Microbiol. 2001 Oct;39(10):3520-3[PID:11574566]|Nature. 1961 191:728-730
392	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 392	Phylotype	Oral			AY207053	5	0.01	343	Oral Clone P2PB_51	712364	0	5	0		N/A					
393	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Parvimonas	sp. HMT 393	Unnamed	Oral			AY207059	8	0.02	309	Oral Strain KCL-P4P_31|Oral Strain KCL-W5159	713008	0	21	3178	SEQF1857	N/A					
396	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 396	Phylotype	Oral			AY207050	1	0.00	459	Oral Clone P4PB_83	712467	0	1	0		N/A					
398	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	oralis subsp. dentisani clade 398	Named	Oral		DSM 27088	AY005045|AY207051	410	1.18	14	Streptococcus dentisani|Oral Clone P2PA_41	1458253	1	146	3867	SEQF2767|SEQF1999|SEQF1704	2017-05-04 (TC) This species was renamed from Streptococcus dentisani to Streptococcus oralis subsp. dentisani based on the published proposal by Jensen et. al. (2016). http://ijs.microbiologyresearch.org.ezp-prod1.hul.harvard.edu/content/journal/ijsem/10.1099/ijsem.0.001433					
402	Bacteria	Firmicutes	Clostridia	Clostridiales	Clostridiales [F-1]	Clostridiales [F-1][G-2]	bacterium HMT 402	Phylotype	Unassigned			AY207065	4	0.01	365	Oral Clone P4PA_66	186802	0	0	0		N/A					
406	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Burkholderiaceae	Ralstonia	sp. HMT 406	Phylotype	Unassigned			AY005032	33	0.09	152	Oral Clone AK168	48736	0	0	0		N/A					
407	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacteriaceae [G-2]	bacterium HMT 407	Phylotype	Unassigned			AY278612	1	0.00	459	Oral Clone C5AKM003	31953	0	0	0		N/A					
408	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter	sp. HMT 408	Phylotype	Unassigned			AY278636	2	0.01	409	Oral Clone C4AKM094	712104	0	2	0		N/A					
411	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	parasanguinis clade 411	Named	Oral			AY278629|AY278634|AY278635|EF399017	366	1.05	15	Oral Clone C2MKM006|Oral Clone C4MKM110|Oral Clone C5AKM109|Streptococcus parasanguinis|Streptococcus parasanguis	2058464	0	0	0	SEQF1702	N/A					
412	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 412	Unnamed	Oral			AY278613	7	0.02	320	Oral Clone C2MKM106	712218	0	133	4096	SEQF1909	N/A					
414	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 414	Unnamed	Oral			AY278610	7	0.02	320	Oral Clone C3ALM064	712122	0	7	0	SEQF2745	N/A					
416	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Coriobacteriaceae	Atopobium	sp. HMT 416	Unnamed	Unassigned			AY278623	101	0.29	75	Oral Clone C3MLM018	712157	0	101	0	SEQF2658	N/A					
417	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 417	Unnamed	Oral			AY278621	8	0.02	309	Oral Clone C3MKM102	712365	0	8	0		N/A					
418	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	parafarraginis	Named	Unassigned			AY278619	17	0.05	218	Oral Strain KCL-C4M_55|Oral Strain KCL-W6353	390842	6	559	6334	SEQF1862	N/A					
419	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Stomatobaculum	longum	Named	Oral		DSM 24645	AY278618|HM120209	33	0.09	152	Oral Clone C4ALM087|Moryella sp. HOT-419	796942	1	30	4111	SEQF2481|SEQF2765	Taxa in this cluster had been provisionally been placed in the genus Moryella because of their proximity to Moryella indoligenes.  However, Epstein  has named HOT-419 Stomatobaculum longum, and so this oral clade we will now place in the genus Stomatobaculum.					
420	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	nucleatum subsp. animalis	Named	Oral			AY278616|AY278617|X55404	255	0.73	25	Oral Clone C4AKM033|Oral Clone C4AKM080	76859	2	2289	20854	SEQF2065|SEQF1883|SEQF2530|SEQF2531|SEQF2539|SEQF2815|SEQF2816|SEQF2817|SEQF2959|SEQF2973	Note: The taxonomy and phylogeny of the Fusobacterium nucleatum subspecies and related Fusobacterium periodontium and Fusobacterium naviforme is not well defined. The 16S rRNA sequence information is probably not reliable for putting strains into valid Fusobacterium nucleatum subspecies.					
422	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Bergeyella	sp. HMT 422	Phylotype	Unassigned			AY278614	14	0.04	236	Oral Clone C4MKM119	712188	0	14	0		N/A					
423	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sp. HMT 423	Lost	Oral			AY278630	1	0.00	459	Oral Clone C2MKM128	712632	0	1	0		N/A					
424	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	kisonensis	Named	Unassigned			AY278620	11	0.03	267	Oral Strain KCL-C4M_47|Oral Strain KCL-W6466	481722	1	469	6627	SEQF1861	N/A					
431	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	infantis clade 431	Named	Oral			AY278633	140	0.40	49	Oral Clone C4AKM023	712633	0	140	0	SEQF2786	N/A					
435	Bacteria	Firmicutes	Clostridia	Clostridiales	Syntrophomonadaceae [VIII]	Syntrophomonadaceae [VIII][G-1]	bacterium HMT 435	Phylotype	Unassigned			AY341821	3	0.01	387	Oral Clone P4PB_66	68298	0	0	0		N/A					
436	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-3]	bacterium HMT 436	Phylotype	Unassigned			AY341819	1	0.00	459	Oral Clone P4PB_06	200643	0	0	0		N/A					
439	Bacteria	Chloroflexi	Anaerolineae	Anaerolineales	Anaerolineaceae	Anaerolineae [G-1]	bacterium HMT 439	Unnamed	Oral			AY331414	1	0.00	459	Oral Clone P2PB_23	292625	0	0	0	SEQF2639|SEQF2640|SEQF2641|SEQF2921	N/A					
442	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 442	Phylotype	Oral			AY341820	6	0.02	332	Oral Clone P4PA_145	712537	0	6	0		N/A					
443	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 443	Phylotype	Oral			AY331415	1	0.00	459	Oral Clone P4PB_24	712468	0	1	0		N/A					
448	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 448	Unnamed	Oral			AY349365	107	0.31	68	Oral Clone IP073	712124	0	203	5029	SEQF1701	N/A					
451	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Catonella	sp. HMT 451	Phylotype	Oral			AY349369	4	0.01	365	Oral Clone FL037	712234	0	4	0		N/A					
455	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Butyrivibrio	sp. HMT 455	Phylotype	Oral			AY349374	1	0.00	459	Oral Clone GI038	830	0	0	0		N/A					
457	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Oribacterium	sinus	Named	Oral			AY349377|AF481222	48	0.14	131	Oral Clone JN088	237576	2	395	5261	SEQF1607	N/A					
458	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Aggregatibacter	sp. HMT 458	Unnamed	Oral			AY349380	12	0.03	255	Oral Clone JM053	712148	0	214	4144	SEQF2445	N/A					
459	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Kingella	sp. HMT 459	Phylotype	Oral			AY349381	1	0.00	459	Oral Clone ID059	712320	0	1	0		N/A					
461	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	ultunensis	Named	Unassigned		CCUG 48460	AY349383	103	0.30	73	Oral Clone HT070	227945	0	102	0	SEQF2852	N/A					
463	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 463	Phylotype	Oral			AY349385	9	0.03	294	Oral Clone GT020	712367	0	9	0		N/A					
465	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Bacteroidaceae	Bacteroides	zoogleoformans	Named	Unassigned			L16488	0	0.00	0	Bacterium zoogleiformans|Capsularis zoogleiformans	28119	2	5	1		N/A					
466	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Alloprevotella	tannerae	Named	Oral			AJ005634	64	0.18	102	Oral Strain TFI-F0032|Prevotella tanneriae	76122	1	124	5591	SEQF1597|SEQF2756	N/A					
467	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-1]	[Eubacterium] sulci	Named	Oral			AJ006963	20	0.06	198	Fusobacterium sulci	186804	0	0	0	SEQF2744	N/A					
468	Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae	Bacillus	subtilis	Named	Unassigned			AB018486	46	0.13	137	Bacillus natto|Bacillus uniflagellatus|Bacillus globigii|Vibrio subtilis	1423	29183	22367	255090	SEQF1173|SEQF1171|SEQF1004|SEQF1007|SEQF1011|SEQF2038|SEQF2324|SEQF2039|SEQF2289|SEQF2290|SEQF2291|SEQF2292|SEQF2293	N/A					
469	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	melaninogenica	Named	Oral			AY349395	78	0.22	89	Bacterium melaninogenicum|Bacteroides melaninogenicus|Fusiformis nigrescens|Hemophilus melaninogenicus|Ristella melaninogenica	28132	546	458	11522	SEQF1142|SEQF1800|SEQF2734	N/A					
472	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 472	Unnamed	Oral			AY349398	15	0.04	228	Oral Clone GI032|Oral Strain TFI-F0046	655809	0	287	5865	SEQF1617	N/A					
473	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Alloprevotella	sp. HMT 473	Unnamed	Oral			AY349399|AY349402	31	0.09	162	Oral Clone HF050|Oral Clone IK062|Oral Strain TFI-F0040	1283313	0	0	0	SEQF1899	N/A					
475	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 475	Unnamed	Oral			AY349401	1	0.00	459	Oral Clone IK053	712471	0	1	0	SEQF1945	N/A					
476	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	subflava	Named	Oral			AJ239291	51	0.15	125	Micrococcus subflavus	28449	73	224	5040	SEQF1165	N/A					
477	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	stutzeri	Named	Unassigned			AF063219	5	0.01	343	Pseudomonas perfectimarina|Pseudomonas perfectomarinus|Achromobacter sewerinii|Achromobacter stutzeri|Bacillus denitrificans|Bacillus nitrogenes|Bacillus stutzeri|Bacterium stutzeri|Pseudomonas perfectomarina|Pseudomonas stanieri	316	828	4069	139747	SEQF1303|SEQF2382|SEQF2170|SEQF2171|SEQF2333|SEQF2513|SEQF2521	N/A					
478	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 478	Unnamed	Oral			AY349404	6	0.02	332	Oral Clone GI064	712538	0	6	0	SEQF2752	N/A					
479	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 479	Lost	Oral			AY349405	36	0.10	149	Oral Clone GT010	712539	0	36	0		N/A					
481	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 481	Lost	Oral			AY349407	14	0.04	236	Oral Clone IK004	712540	0	14	0		N/A					
483	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonellaceae [G-1]	bacterium HMT 483	Phylotype	Oral			AY349410	2	0.01	409	Oral Clone JS031	31977	0	0	0		N/A					
484	Bacteria	Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Erysipelothrix	tonsillarum	Named	Unassigned			AB034201	0	0.00	0	Erysipelothrix rhusiopathiae	38402	19	27	1678	SEQF2490	N/A					
485	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Rhizobiaceae	Agrobacterium	tumefaciens	Named	Unassigned			M11223	10	0.03	280	Achromobacter radiobacter|Alcaligenes radiobacter|Bacillus radiobacter|Bacterium radiobacter|Pseudomonas radiobacter|Agrobacterium radiobacter|Bacterium tumefaciens|Phytomonas tumefaciens|Polymonas tumefaciens|Pseudomonas tumefaciens	358	5235	7363	104544	SEQF2482|SEQF2321|SEQF1087|SEQF2035|SEQF2322|SEQF1167	N/A					
488	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-1]	bacterium HMT 488	Phylotype	Oral			AY349415	1	0.00	459	Oral Clone HD027	713059	0	0	0	SEQF2844	N/A					
490	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 490	Unnamed	Unassigned			AY349417	3	0.01	387	Oral Clone JU025	713469	0	3	0		N/A					
493	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-5]	bacterium HMT 493	Phylotype	Unassigned			AY349373	1	0.00	459	Oral Clone JH012	186804	0	0	0		N/A					
494	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnoanaerobaculum	saburreum	Named	Oral		JCM11021	AB525414|AY349376	109	0.31	66	Eubacterium saburreum| Oral Clone IR009	467210	2	627	11518	SEQF1886|SEQF1962|SEQF2760|SEQF2761	Recently renamed in paper "Lachnoanaerobaculum a new genus in Lachnospiraceae; characterization of Lachnoanaerobaculum umeaense gen. nov., sp. nov., isolated from human small intestine, Lachnoanaerobaculum orale gen. nov., sp. nov., isolated from saliva and reclassification of Eubacterium saburreum (Prevot) Holdeman and Moore 1970 as Lachnoanaerobaculum saburreum comb. nov". PMID: 22228654.  The genome for this strain is available as Eubacterium saburreum DSM 3986 (AEPW00000000).  The name change is not yet refledted for the genome at NCBI (11-02-2012).					
495	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-3]	bacterium HMT 495	Phylotype	Oral			AY349378	2	0.01	409	Oral Clone JS001	186804	0	0	0		N/A					
496	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnoanaerobaculum	sp. HMT 496	Phylotype	Unassigned			AY349379	1	0.00	459	Oral Clone JI012	1164882	0	0	0		N/A					
498	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 498	Unnamed	Oral			AY349387	15	0.04	228	IK040	712368	0	15	0	SEQF2920	N/A					
499	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	sp. HMT 499	Phylotype	Oral			AY349388	11	0.03	267	Oral Clone JC012	712402	0	11	0		N/A					
500	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnospiraceae [G-8]	bacterium HMT 500	Unnamed	Oral			AY349389	5	0.01	343	Oral Clone JM048	186803	0	0	0	SEQF2663	N/A					
501	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 501	Phylotype	Unassigned			AY349409	2	0.01	409	Oral Clone JI021	712541	0	2	0		N/A					
503	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-3]	bacterium HMT 503	Phylotype	Oral			DQ003613	1	0.00	459	Oral Clone MB1_G13	200643	0	0	0		N/A					
504	Bacteria	Firmicutes	Mollicutes	Mollicutes [O-1]	Mollicutes [F-1]	Mollicutes [G-1]	bacterium HMT 504	Phylotype	Oral			DQ003614	1	0.00	459	Mycoplasmataceae genomosp. P1|Oral clone MB1_G23	31969	0	0	0		N/A	Currently no known isolate.	Presumptively Gram-positive			
505	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-5]	bacterium HMT 505	Phylotype	Oral			DQ003615	3	0.01	387	Bacteroidales genomosp. P3|Oral Clone MB1_G34	200643	0	0	0		N/A					
507	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-5]	bacterium HMT 507	Phylotype	Oral			DQ003617	6	0.02	332	Oral Clone MB2_G17	200643	0	0	0		N/A					
508	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 508	Phylotype	Oral			DQ003618	3	0.01	387	Oral Clone MB2_G19	712747	0	3	0		N/A					
509	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-4]	bacterium HMT 509	Phylotype	Unassigned			DQ003619	1	0.00	459	Oral Clone MB2_P04	200643	0	0	0		N/A					
511	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-5]	bacterium HMT 511	Phylotype	Oral			DQ003634	4	0.01	365	Oral Clone MB3_C19	200643	0	0	0		N/A					
512	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Aggregatibacter	sp. HMT 512	Lost	Oral			DQ003621	5	0.01	343	Oral Clone MB3_C24	712149	0	5	0		N/A					
513	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Aggregatibacter	sp. HMT 513	Phylotype	Oral			DQ003635	4	0.01	365		712150	0	4	0		N/A					
515	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 515	Phylotype	Oral			DQ003622	1	0.00	459	MB3_P13	712472	0	1	0		N/A					
516	Bacteria	Bacteroidetes	Bacteroidetes [C-2]	Bacteroidetes [O-2]	Bacteroidetes [F-2]	Bacteroidetes [G-6]	bacterium HMT 516	Phylotype	Oral			DQ003623	2	0.01	409	Oral clone MB3_P19	200643	0	0	0		N/A					
517	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 517	Phylotype	Oral			DQ003624	5	0.01	343	Oral Clone MB3_P23	712748	0	5	0		N/A					
518	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 518	Phylotype	Oral			DQ003625	5	0.01	343	Oral Clone MB4_G11	712749	0	5	0		N/A					
521	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Mitsuokella	sp. HMT 521	Phylotype	Oral			DQ003628	19	0.05	205	MB5_P06	712391	0	19	0		N/A					
523	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	sp. HMT 523	Phylotype	Unassigned			DQ003630	2	0.01	409	Oral Clone MB5_P15	712403	0	2	0		N/A					
524	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonella	atypica	Named	Oral			DQ003631	208	0.60	30	Oral Clone MB5_P17|Veillonella parvula	39777	30	656	9674	SEQF2243|SEQF1918|SEQF1939	N/A					
525	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 525	Phylotype	Oral			DQ003632	13	0.04	244	Oral Clone MB6_C03	712126	0	13	0		N/A					
526	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 526	Phylotype	Oral			AY944134|DQ003633	9	0.03	294	Oral Clone MB7_G16|Oral Clone P4P_53	712473	0	9	0		N/A					
529	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	acidophilus	Named	Unassigned			AB008203	4	0.01	365	Bacillus acidophilus|Thermobacterium intestinale	1579	2645	3767	29726	SEQF2108|SEQF1761|SEQF1073|SEQF2540|SEQF2551|SEQF2552|SEQF2600|SEQF2601|SEQF2602|SEQF2698	N/A					
530	Bacteria	Actinobacteria	Actinobacteria	Propionibacteriales	Propionibacteriaceae	Cutibacterium	acnes	Named	Oral			AF145256	70	0.20	97	Corynebacterium acnes|Bacillus acnes|Propionibacterium acnes	1747	4031	9572	294747	SEQF2191|SEQF2161|SEQF2192|SEQF2162|SEQF2163|SEQF2164|SEQF2165|SEQF2166|SEQF1801|SEQF1286|SEQF1014|SEQF2189|SEQF2190|SEQF2702	N/A					
531	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Aggregatibacter	actinomycetemcomitans	Named	Oral		ATCC 33384|NCTC 9710	M75036	9	0.03	294	Actinobacillus actinomycetemcomitans|Bacterium acetinomycetum|Bacterium actinomycetem|Bacterium comitans|Haemophilus actinomycetemcomitans|Haemophilus actinomyceticomitans	714	2648	8727	76460	SEQF2438|SEQF2320|SEQF2439|SEQF2032|SEQF2033|SEQF1845|SEQF1894|SEQF1074|SEQF2294|SEQF2295|SEQF2296|SEQF2034|SEQF2297|SEQF1953|SEQF2250|SEQF1955|SEQF1954|SEQF2436|SEQF2437|SEQF1707|SEQF2823|SEQF2824|SEQF2825|SEQF2826|SEQF2827|SEQF2828|SEQF2829|SEQF2830|SEQF2831|SEQF2832|SEQF2833|SEQF2834|SEQF2835|SEQF2836|SEQF2837|SEQF2838|SEQF2839	N/A					J Med Microbiol. 2002 Dec;51(12):1013-20[PID:12466398]|Annu Rev Microbiol. 2003;57:29-55[PID:14527274]
534	Bacteria	Firmicutes	Bacilli	Lactobacillales	Carnobacteriaceae	Granulicatella	adiacens	Named	Oral			D50540	515	1.48	9	Abiotrophia adiacens|Abiotrophia adjacens|Streptococcus adjacens	46124	55	626	3846	SEQF1605	N/A					
535	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	aegyptius	Named	Oral			M75044	5	0.01	343	Bacterium pseudo|Bacillus aegyptius|Bacillus conjunctivitidis|Bacterium aegyptiacum|Bacterium conjunctivitis|Hemophilus conjunctivitidis	197575	57	164	3068	SEQF1963	N/A					
536	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	aeruginosa	Named	Unassigned			Z76651	133	0.38	54	probable synonym|Bacillus aeruginosus|Bacillus pyocyaneus|Bacterium aeruginosum|Bacterium pyocyaneum|Micrococcus pyocyaneus|Pseudomonas polycolor|Pseudomonas pyocyanea	287	49842	120751	1571459	SEQF1015|SEQF2193|SEQF1295|SEQF2194|SEQF1619|SEQF2167|SEQF2168|SEQF1991|SEQF1992|SEQF1297|SEQF1298|SEQF1290|SEQF1291|SEQF1296|SEQF2696|SEQF2697	N/A					
537	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	agalactiae	Named	Unassigned			AF015927	2	0.01	409	Streptococcus difficile|Streptoccocus de la mammite|Streptococcus difficilis|Streptococcus mastitidis	1311	7417	72744	553055	SEQF1333|SEQF1335|SEQF1336|SEQF1337|SEQF1995|SEQF2209|SEQF1338|SEQF1334|SEQF1331|SEQF1332|SEQF2516	N/A					
538	Bacteria	Firmicutes	Clostridia	Clostridiales	Eubacteriaceae [XV]	Pseudoramibacter	alactolyticus	Named	Oral			AB036759	197	0.56	35	Eubacterium alactolyticum|Ramibacterium alactolyticum|Ramibacterium dentium|Ramibacterium pleuriticum	113287	24	363	5030	SEQF1993	N/A					
539	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Filifactor	alocis	Named	Oral			AJ006962	108	0.31	67	Fusobacterium alocis	143361	43	191	4850	SEQF1018	N/A					
540	Bacteria	Proteobacteria	Gammaproteobacteria	Cardiobacteriales	Cardiobacteriaceae	Cardiobacterium	valvarum	Named	Oral			AF144696	13	0.04	244		194702	11	417	6051	SEQF1860	N/A					
541	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	amylovorum	Named	Oral			AF023045	4	0.01	365		59892	6	10	1		N/A					
542	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcus	anaerobius	Named	Oral			AF023045	10	0.03	280	Streptococcus anaerob|Streptococcus anaerobius	1261	236	691	6808	SEQF1921|SEQF1895|SEQF2506	N/A					
543	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	anginosus	Named	Oral			AF104678	566	1.62	6		1328	402	2649	41254	SEQF1692|SEQF1996|SEQF2210|SEQF2397|SEQF2334|SEQF2335|SEQF2587|SEQF2588|SEQF2609	N/A					
544	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Brucellaceae	Ochrobactrum	anthropi	Named	Unassigned			AM114398	19	0.05	205		529	284	2635	26923	SEQF1457|SEQF2379|SEQF1284|SEQF2562|SEQF2673	N/A					
545	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Aggregatibacter	aphrophilus	Named	Oral			M75041	3	0.01	387	Haemophilus aphrophilus|Haemophilus paraphrophilus	732	24	274	13931	SEQF1675|SEQF1221|SEQF1956	N/A					
547	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	asaccharolytica	Named	Unassigned			L16490	0	0.00	0	Bacteroides asaccharolyticus|Bacteroides melaninogenicus	28123	59	154	7927	SEQF2145|SEQF2160	N/A					
548	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilus	asaccharolyticus	Named	Unassigned			D14138	0	0.00	0	Peptococcus aerogenes|Schleiferella asaccharolytica|Micrococcus asaccharolyticus|Peptococcus asaccharolyticus|Peptostreptococcus asaccharolyticus|Staphylococcus asaccharolyticus	1258	15	22	14		N/A					
550	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	aureus	Named	Nasal			D83357	15	0.04	228	Micrococcus aureus|Micrococcus pyogenes|Staphlococcus pyogenes|Staphylococcus pyogenes	1280	85269	368332	11181246	SEQF1488|SEQF1489|SEQF1803|SEQF2202|SEQF1804|SEQF2203|SEQF1805|SEQF1806|SEQF1807|SEQF1808|SEQF1809|SEQF1810|SEQF1310|SEQF1811|SEQF1812|SEQF1813|SEQF1814|SEQF1815|SEQF1824|SEQF1825|SEQF1826|SEQF1827|SEQF1828|SEQF1829|SEQF1830|SEQF1831|SEQF2198|SEQF1490|SEQF1832|SEQF2199|SEQF1833|SEQF1725|SEQF2200|SEQF1636|SEQF1834|SEQF2201|SEQF1835|SEQF1491|SEQF2173|SEQF1314|SEQF1315|SEQF1316|SEQF1317|SEQF1319|SEQF1311|SEQF1320|SEQF1318|SEQF1637|SEQF1816|SEQF1817|SEQF1818|SEQF1819|SEQF1620|SEQF1820|SEQF1312|SEQF1621|SEQF1821|SEQF1313|SEQF1822|SEQF1431|SEQF1823|SEQF1492	N/A					
552	Bacteria	Actinobacteria	Actinobacteria	Propionibacteriales	Propionibacteriaceae	Cutibacterium	avidum	Named	Unassigned			AJ003055	2	0.01	409	Mycobacterium avidum|Corynebacterium avidum|Bacteroides avidus|Propionibacterium avidum	33010	55	905	12596	SEQF1990|SEQF2522	N/A					
553	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	baroniae	Named	Oral			AJ012605	5	0.01	343	Prevotella genomosp.|Prevotella genomospecies	305719	8	409	7229	SEQF1934|SEQF2582|SEQF2675	N/A					
554	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter	baumannii	Named	Unassigned			X81660	27	0.08	176	Acinetobacter baumanni|Bacterium anitratum	470	4228	160264	2859777	SEQF1622|SEQF1398|SEQF1164|SEQF1486|SEQF1161|SEQF1727|SEQF1384|SEQF1485|SEQF1623	N/A					
555	Bacteria	Firmicutes	Bacilli	Bacillales	Gemellaceae	Gemella	bergeri	Named	Oral			AY005050	0	0.00	0	Gemella bergeriae|Gemella bergeri	84136	7	290	3067	SEQF2460	N/A					
556	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	bivia	Named	Oral			L16475	0	0.00	0	Bacteroides bivius	28125	116	311	6562	SEQF2380|SEQF1797|SEQF2728|SEQF2729|SEQF2730	N/A					
557	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-9]	[Eubacterium] brachy	Named	Oral			U13038	87	0.25	83		186804	0	0	0	SEQF2459|SEQF2759|SEQF2787	N/A					
558	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	brevis	Named	Unassigned			AF090328	1	0.00	459	Bacillus casei g|Bacillus g|Betabacterium breve|Lactobacterium breve	1580	567	1878	27491	SEQF1252|SEQF1638|SEQF2565	N/A					
559	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Bradyrhizobiaceae	Afipia	broomeae	Named	Unassigned			U87759	2	0.01	409		56946	3	37	8643	SEQF2411	N/A					
560	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	buccae	Named	Oral			L16478	9	0.03	294	Bacteroides buccae|Bacteroides capillus|Bacteroides pentosaceus	28126	29	616	9943	SEQF1985|SEQF1798|SEQF1615	N/A					
561	Bacteria	Firmicutes	Mollicutes	Mycoplasmatales	Mycoplasmataceae	Mycoplasma	buccale	Named	Unassigned			AF125586	0	0.00	0	Mycoplasma orale type 2	55602	2	15	2		N/A					
562	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	buccalis	Named	Unassigned			L16476	0	0.00	0	Bacteroides buccalis	28127	10	253	4771	SEQF1799|SEQF2731|SEQF2732	N/A					
563	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	buccalis	Named	Oral		ATCC 14201	L37788	12	0.03	255	Leptothrix buccalis	40542	83	33	6625	SEQF1028|SEQF1287	Leptotrichia buccalis is a common oral bacteria.  Previously, all human oral Leptotrichia isolates were lumped into the single species, L. buccalis.  From 16S rRNA studies we now recognize that there are approximately 20 Leptotrichia species, five of which been named [2].  The early literature was confused as two organisms were called Leptotrichia buccalis [1].	Leptotrichia buccalis requires anaerobic culture for initial isolation.  Some strains are reported to grow aerobically in the presence of CO2 on subsequent passage.	Straight or slightly curved rods.  Cells 0.8-1.5 um wide and 5-15 um long.  Cells frequently arranged in chains or septate filaments.  Gram-negative, but may be Gram-positive in young cultures.  Ferments glucose and several other sugars to lactic acid.	Commonly found in dental plaque.	Leptotrichia buccalis is not commonly pathogenic, but has o­n rare occasions been associated with bacteraemia and endocarditis, particularly in neutropenic patients [3].   It has been endodontic leasions  by checkerboard hybridization [4].	Int J Syst Evol Microbiol. 2004 Mar;54(Pt 2):583-92[PID:15023979]|Oral Microbiol Immunol. 2007 Dec;22(6):390-7[PID:17949342]|Scand J Infect Dis. 2006;38(8):712-6[PID:16857623]|Bacteriol Rev. 1961 Jun;25:131-41[PID:13705433]
565	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Enterobacter	cancerogenus	Named	Unassigned			Z96078	2	0.01	409	CDC Enteric Group 19|Enterobacter taylorae|Erwinia cancerogena	69218	25	276	9068	SEQF1481|SEQF2604	N/A					
567	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	caprae	Named	Oral			AB009935	3	0.01	387		29380	38	308	8361	SEQF2204	N/A					
568	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	casei	Named	Unassigned			D16552	0	0.00	0	Bacillus a|Bacillus casei a|Bacterium casei a|Caseobacterium vulgare|Lactobacterium casei|Streptobacterium casei	1582	3323	6514	104213	SEQF2109|SEQF2110|SEQF1493|SEQF1246|SEQF2493|SEQF2494|SEQF2495|SEQF2496|SEQF2566|SEQF2699	N/A					
569	Bacteria	Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Eggerthia	catenaformis	Named	Oral		ATCC 25536	M23729	9	0.03	294	Bacteroides catenaformis|Catenabacterium catenaforme|Lactobacillus catenaforme	31973	1	147	4825	SEQF2477|SEQF1882|SEQF2762	N/A					
571	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Burkholderiaceae	Burkholderia	cepacia	Named	Unassigned			AF097530	16	0.05	224	Pseudomonas kingii|Pseudomonas cepacia|Pseudomonas multivorans	292	2434	5082	43044	SEQF2408|SEQF2599|SEQF2612|SEQF2716	N/A					
572	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	veroralis	Named	Oral			L16473	1	0.00	459	Bacteroides veroralis	28137	11	393	8080	SEQF1663|SEQF2511|SEQF2688	N/A					
574	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Escherichia	coli	Named	Unassigned			M25588	171	0.49	40	Bacillus coli|Bacterium coli	562	317670	824479	11496727	SEQF1219|SEQF1213|SEQF1137|SEQF1710|SEQF1194|SEQF1711|SEQF1712|SEQF1754|SEQF1755|SEQF1756|SEQF1624|SEQF1189|SEQF1429|SEQF1198|SEQF1713|SEQF1186|SEQF1199|SEQF1200|SEQF1188|SEQF1503|SEQF1433|SEQF1205|SEQF1192|SEQF1639|SEQF1506|SEQF1206|SEQF1193|SEQF1408|SEQF1507|SEQF1207|SEQF1196|SEQF1215|SEQF1508|SEQF1504|SEQF1197|SEQF1509|SEQF1511|SEQF1203|SEQF1510|SEQF1217|SEQF1512|SEQF1376|SEQF1513|SEQF1519|SEQF1514|SEQF1218|SEQF1515|SEQF1516|SEQF1430|SEQF1517|SEQF1518|SEQF1191|SEQF1572|SEQF1247|SEQF1208|SEQF1220	N/A					
575	Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	concisus	Named	Oral			L06977	69	0.20	98		199	97	1602	31512	SEQF1177|SEQF2326|SEQF2578|SEQF2579|SEQF2580	N/A					
576	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	constellatus	Named	Oral			AF104676	158	0.45	45	Diplococcus constellatus|Peptococcus constellatus	76860	220	1260	24055	SEQF2211|SEQF2589|SEQF2590|SEQF2591|SEQF2643	N/A					
577	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Eikenella	corrodens	Named	Oral			M22512	30	0.09	164	Bacteroides corrodens|Ristella corrodens	539	906	242	9314	SEQF1016|SEQF2615	N/A					
578	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	cristatus clade 578	Named	Oral		ATCC 51100|AS 1.3089|CCUG 48365|DSM 19165|LMG 21535|	AB008313	325	0.93	20	Streptococcus crista|Streptococcus oligofermentans	45634	32	506	6242	SEQF1997|SEQF1669|SEQF2520						
579	Bacteria	Actinobacteria	Coriobacteriia	Eggerthellales	Eggerthellaceae	Cryptobacterium	curtum	Named	Oral			AB019260	31	0.09	162		84163	6	42	4068	SEQF1480	N/A					
580	Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	curvus	Named	Oral			L04313	6	0.02	332	Wolinella curva	200	13	119	6992	SEQF1178|SEQF2488	Campylobacter curvus rRNA sequences come in long (with IVS) and short (without IVS) forms.  Reference sequence C. curvus I is short form, C. curvus II is long form.					
582	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Kingella	denitrificans	Named	Oral			L06166	30	0.09	164		502	30	128	5018	SEQF2079	N/A					
583	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	dentalis	Named	Oral			X81876	2	0.01	409	Mitsuokella dentalis|Hallella seregens	52227	4	188	10693	SEQF2022	N/A					
584	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	denticola	Named	Oral		ATCC 35405	M71236	77	0.22	90	Spirillum dentium|Spirochaeta ambigua|Spirochaeta comandonii|Spirochaeta dentium|Spirochaeta microdentium|Spirochaeta orthodonta|Spirochaete denticola|Spirochaete dentium|Spironema dentium|Treponema ambiguum|Treponema comandonii|Treponema dentium|Treponema dentium-stenogyratum|Treponema microdentium|Treponema orthodontum	158	1133	1518	69234	SEQF1679|SEQF1873|SEQF1872|SEQF1864|SEQF1869|SEQF1868|SEQF1866|SEQF1871|SEQF1061|SEQF1867|SEQF1874|SEQF1876|SEQF1878|SEQF1865|SEQF1870|SEQF1875|SEQF1877	T. denticola is a member of Group II, o­ne of the 10 phylogenetic groups of oral treponemes [1,2].  	Anaerobic growth in peptone-yeast extract, serum containing medium.  White, diffuse colonies (0.3 to 1 mm) in diameter o­n solid media after 2 weeks incubation. 	Obligately anaerobic, catalase negative, helically coiled with translational motility.  Will creep o­n solid surfaces, such as agar media or glass.  Cells are Gram-negative,  0.2 um by 6-16  um, with a 2-4-2 periplasmic flagellar arrangement. G+C content is 37-38 mol%Ferments amino acids (alanine, cysteine, glycine and serine) with acetate as the major endproduct, with lesser amounts of lactic acid, succinic acid and formic acid.   Ammonia is produced from amino acids. Arginine can serve as an energy source.  Glucose can be degraded using the Embden-Meyerhof pathway [3], but not by the glycolytic pathway.   Strains are resistant to rifampicin.	Frequently isolated from human subgingival plaque, especially from subjects with periodontitis.  Reported to be present in chimpanzees	Known as a member of the "red complex" and is strongly associated with periodontal disease [4].  Also associated with endodontic lesions.	Oral Microbiol Immunol. 2000 Jun;15(3):196-202[PID:11154403]|Arch Mikrobiol. 1971;78(3):234-51[PID:4938689]|Int J Syst Bacteriol. 1993 Apr;43(2):196-203[PID:8494734]|J Clin Periodontol. 1998 Feb;25(2):134-44[PID:9495612]
586	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Parascardovia	denticolens	Named	Unassigned			D89331	17	0.05	218	Bifidobacterium denticolens	78258	10	159	8492	SEQF2021|SEQF1655|SEQF2391	N/A					
587	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Micrococcaceae	Rothia	dentocariosa	Named	Oral			M59055	207	0.59	33	Rothia denticariosa|Actinomyces dentocariosus|Nocardia dentocariosus|Nocardia salivae	2047	109	280	10601	SEQF1994|SEQF1925	N/A					
588	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	dentium	Named	Unassigned			D86183	55	0.16	116	Actinomyces eriksonii	1689	42	290	17235	SEQF1911|SEQF1497|SEQF1385|SEQF2053	N/A					
590	Bacteria	Proteobacteria	Alphaproteobacteria	Caulobacterales	Caulobacteraceae	Brevundimonas	diminuta	Named	Unassigned		ATCC 14736	D49422	0	0.00	0	Bacterium parvulum|Pseudomonas diminuta	293	73	947	12821	SEQF1892|SEQF2056	N/A					
591	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	diphtheriae	Named	Unassigned			X82059	0	0.00	0	Bacillus diphtheriae|Bacterium diphtheriae|Microsporon diphthericum|Microsporon diphtheriticum|Mycobacterium diphtheriae|Pacinia loeffleri	1717	2542	1225	86562	SEQF2272|SEQF2273|SEQF2274|SEQF2275|SEQF2276|SEQF2277|SEQF1184|SEQF2372|SEQF2267|SEQF2268|SEQF2388|SEQF2048|SEQF2269|SEQF2270|SEQF2271|SEQF2703|SEQF2704	N/A					
593	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Mogibacterium	diversum	Named	Oral			AB037874	2	0.01	409		114527	1	8	0		N/A					
594	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	downei	Named	Unassigned			AY188350	49	0.14	128		1317	46	138	3818	SEQF1846	N/A					
595	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	durum	Named	Oral			Z97069	28	0.08	171		61592	5	147	5646	SEQF1897	N/A					
596	Bacteria	Firmicutes	Bacilli	Lactobacillales	Carnobacteriaceae	Granulicatella	elegans	Named	Oral			Y15408	136	0.39	52	Abiotrophia elegans	137732	20	176	3119	SEQF1608	N/A					
597	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Bradyrhizobiaceae	Bradyrhizobium	elkanii	Named	Unassigned			U35000	0	0.00	0		29448	95	6275	37787	SEQF2325|SEQF2487|SEQF2595|SEQF2596|SEQF2597|SEQF2598	N/A					
598	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	elongata	Named	Oral			L06171	40	0.11	144		495	45	407	6179	SEQF1166	N/A					
600	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	enoeca	Named	Oral			AJ005635	0	0.00	0		76123	2	242	1773	SEQF2647|SEQF2677|SEQF2792	N/A					
601	Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	epidermidis	Named	Oral			D83363	3	0.01	387	Albococcus epidermidis|Micrococcus epidermidis	1282	9661	24403	269602	SEQF2383|SEQF1836|SEQF1838|SEQF1640|SEQF1837|SEQF2205|SEQF2206|SEQF2207|SEQF1322|SEQF1324	N/A					
602	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Coriobacteriaceae	Slackia	exigua	Named	Oral			AF101240	2	0.01	409	Eubacterium exiguum	84109	17	32	3811	SEQF1599	N/A		Gram positive non-spore forming, non-motile bacillusObligate anaerobeCellular morphology: 0.5 x 1.0 um, singly or in clumpsColonial morphology: translucent colonies < 1 mm diameter after prolonged incubation o­n BHI-blood agarNo detectable metabolic end-products after growth in PYGGAC content of DNA:60-64 mol%	Has been isolated by at least 3 groups of investigatorsFound in most subjects with periodontitis by DNA hybridization (Wade, unpublished)	Adult periodontitis [5]Necrotic pulps [10]Dentoalveolar abscesses [1]	Oral Microbiol Immunol. 2006 Dec;21(6):381-4[PID:17064396]|Microb Ecol Health Dis 1993 6:269|Int J Syst Bacteriol. 1996 Oct;46(4):1120-4[PID:8863445]|J Periodontal Res. 2004 Aug;39(4):213-20[PID:15206913]|Oral Microbiol Immunol. 2004 Oct;19(5):343-6[PID:15327650]|Infect Immun. 1983 Nov;42(2):510-5[PID:6642641]|Int J Syst Bacteriol. 1999 Apr;49 Pt 2:595-600[PID:10319481]|Int Endod J. 2001 Sep;34(6):463-70[PID:11556514]|J Med Microbiol. 1994 Feb;40(2):115-7[PID:8107059]|J Med Microbiol. 2001 Nov;50(11):947-51[PID:11699590]
603	Bacteria	Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Bulleidia	extructa	Named	Oral		DSM 13220	AF220064	11	0.03	267		118748	6	49	2818	SEQF1088|SEQF1730	Solobacterium moorei is a closely related species and on the basis of its position in the 16S rRNA phylogenetic tree appears to represents a novel species within the genus Bulleidia. The name Bulleidia would have precedence by prior publication under Rule 27 of the Bacteriological Code.	Slow growth on Fastidious Anaerobe Agar + 5 % horse blood. After 7 days incubation, colonies are 0.7-0.9 mm in diameter, circular, entire, low convex, grey to off-white, opaque and glossy	Gram positive short rods [1]. Obligate anaerobes. Ferment glucose and maltose. Metabolic end-products of glucose metabolism are moderate amounts of acetate and lactate and trace amounts of succinate. Arginine is hydrolysed. mol % G+C content of the DNA is 38. 	Found in the human mouth	Isolated from subgingival plaque in periodontitis and from odontogenic infections [2,3,4].	Int J Syst Evol Microbiol. 2000 May;50 Pt 3:979-83[PID:10843035]|J Periodontal Res. 2004 Aug;39(4):213-20[PID:15206913]|J Med Microbiol. 2001 Nov;50(11):947-51[PID:11699590]|Ann Periodontol. 2002 Dec;7(1):8-16[PID:16013212]
604	Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae	Enterococcus	faecalis	Named	Unassigned			Y18293	138	0.40	50	Enterocoque Thiercelin|Enterococcus proteiformis|Enterocoque|Micrococcus ovalis|Micrococcus zymogenes|Streptococcus faecalis|Streptococcus glycerinaceus|Streptococcus liquefaciens	1351	11756	51809	1140113	SEQF1748|SEQF1749|SEQF1750|SEQF1751|SEQF1752|SEQF1753|SEQF2278|SEQF1080|SEQF1495|SEQF1079|SEQF1449|SEQF1735|SEQF1736|SEQF1737|SEQF1738|SEQF1739|SEQF1740|SEQF1741|SEQF1260|SEQF1742|SEQF1743|SEQF1744|SEQF1745|SEQF1746|SEQF1747	N/A					
605	Bacteria	Proteobacteria	Deltaproteobacteria	Desulfovibrionales	Desulfovibrionaceae	Desulfovibrio	fairfieldensis	Named	Unassigned			AJ251630	0	0.00	0		44742	16	4	1	SEQF2793	N/A					
606	Bacteria	Firmicutes	Mollicutes	Mycoplasmatales	Mycoplasmataceae	Mycoplasma	faucium	Named	Oral			AF125590	5	0.01	343	Mycoplasma orale type 3	56142	4	28	1		N/A					
607	Bacteria	Firmicutes	Mollicutes	Mycoplasmatales	Mycoplasmataceae	Mycoplasma	fermentans	Named	Unassigned			M24289	0	0.00	0	Asterococcus fermentans|Micromyces hominis|Schizoplasma fermentans	2115	378	150	7751	SEQF1928|SEQF1263|SEQF1265	N/A					
608	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	fermentum	Named	Oral			M58819	60	0.17	109	Bacillus casei d|Bacillus d|Lactobacillus cellobiosus|Lactobacterium fermentum	1613	668	4339	31041	SEQF1964|SEQF1765|SEQF1766|SEQF1533|SEQF2541|SEQF2605	N/A					
609	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	flava	Named	Oral			AJ239301	110	0.32	64		34026	18	138	16		N/A					
610	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	flavescens	Named	Oral			AJ239280	115	0.33	59		484	35	475	9369	SEQF1790|SEQF1195	N/A					
612	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	fluorescens	Named	Unassigned			Z76662	12	0.03	255	Bacterium fluorescen|Bacillus fluorescens|Bacterium fluorescens|Liquidomonas fluorescens	294	4559	15278	216301	SEQF2195|SEQF2196|SEQF1301|SEQF2381|SEQF2169|SEQF1300|SEQF1302|SEQF2332	N/A					
613	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Tannerella	forsythia	Named	Oral	0		L16495	88	0.25	81	Bacteroides forsythus|Tannerella forsythensis	28112	511	188	8955	SEQF1072|SEQF2738						
614	Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae	Lysinibacillus	fusiformis	Named	Unassigned			M77486	0	0.00	0	Aerobacillus fusiformis|Bacillus sphaericus	28031	36	1096	23807	SEQF1920|SEQF2422|SEQF2693	Bacillus fusiformis was renamed to Lysinibacillus fusiformis in 2007. (http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.63867-0)					
615	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	gasseri	Named	Oral			M58820	279	0.80	24		1596	335	1424	29082	SEQF1251|SEQF1767|SEQF1768|SEQF1769|SEQF2087|SEQF1255|SEQF2088|SEQF2497|SEQF2557|SEQF2558|SEQF2700	N/A					
616	Bacteria	Firmicutes	Mollicutes	Mycoplasmatales	Mycoplasmataceae	Mycoplasma	genitalium	Named	Unassigned			X77334	0	0.00	0		2097	862	1149	7750	SEQF1267|SEQF2377|SEQF2378|SEQF2375|SEQF2376|SEQF1268|SEQF2779	N/A					
617	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	georgiae	Named	Oral			X80413	1	0.00	459	Actinomyces D08	52768	7	674	6144	SEQF1902|SEQF2574	N/A					
618	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	gerencseriae	Named	Oral			X80414	36	0.10	149	Actinomyces israelii	52769	28	109	2285	SEQF1664|SEQF2575	N/A					
619	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	gingivalis	Named	Oral			X73964	89	0.26	80	Bacteroides gingivalis	837	5704	8339	53714	SEQF1975|SEQF2392|SEQF1538|SEQF1064|SEQF2447|SEQF2355|SEQF1908|SEQF2458|SEQF2366|SEQF2457|SEQF2356|SEQF2507|SEQF2616|SEQF2743|SEQF2742|SEQF2741|SEQF2740|SEQF2797|SEQF2798|SEQF2799	N/A					
621	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	gonorrhoeae	Named	Unassigned			X07714	0	0.00	0	Diplococcus gonorrhoeae|Gonococcus neisseri|Merismopedia gonorrhoeae|Micrococcus der gonorrhoe|Micrococcus gonococcus|Micrococcus gonorrhoeae	485	10913	23571	57815	SEQF1626|SEQF1627|SEQF1628|SEQF1629|SEQF1630|SEQF1109|SEQF1631|SEQF1632|SEQF1794|SEQF1791|SEQF1633|SEQF1272|SEQF1792|SEQF1793|SEQF2139|SEQF2158|SEQF1625|SEQF1699	N/A					
622	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	gordonii	Named	Oral		ATCC 10558|NCTC7865	AF003931	478	1.37	10		1302	729	956	6716	SEQF1066	Viridans type of streptococci has had taxonomic revisions.  Previously designated as strains of Streptococcus sanguis subsp. sanguis [1,4].  Suggested that strain NCTC 3165, a strain of Streptococcus mitis, be included [4].  	Alpha-hemolytic colonies (0.7- 1.2 mm diameter) o­n blood agar and extensive greening o­n chocolate agar.   	Facultatively anaerobic, Gram positive cocci, approximately 1 um in diameter, that grow in short chains in broth cultures.   Carbohydrates are femented primarily to lactic acid and no gas. Catalase negative.  Cell wall contains glycerol teichoic acid and rhamnose. Peptidoglycan type is Lys-Ala1-3S. gordonii is similar to S. sanguis (sanguinis) but can be differentiated based o­n the following; DNA homology, lower G+C content of the DNA (42  vs 46 mol%), ferments amygdalin, has alkaline phosphatase and B-glucosaminidase activities, lacks IgA1 protease activity, multilocus enzyme analysis [4].3 biovars of S. gordonii differ biochemically and serologically, but all biovars possess the group H antigen [4] 	Commonly found in the human oral cavity and throat.  Has been isolated from blood and heart valves of patients with bacterial endocarditis.  May be found occasionally in human feces	Generally associated with healthy oral microflora, but has been associated with intact enamel in children with primary caries surfaces [2].  May play a role in caries production [3].Has also been associated with infective endocarditis and recurrent aphthous ulcerations	Int J Syst Bacteriol. 1989 Oct;39(4):471-84.|J Gen Microbiol. 1975 Nov;91(1):92-8[PID:1202161]|J Clin Microbiol. 2002 Mar;40(3):1001-9[PID:11880430]|J Dent Res. 1993 Feb;72(2):508-16[PID:8423248]
623	Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	gracilis	Named	Oral			L04320	362	1.04	16	Bacteroides gracilis	824	42	455	5696	SEQF1005|SEQF2434	In 1981, four species were recognized as comprising what had previously been called Bacteroides corrodens [5].  o­ne of these organisms was called Bacteroides gracilis, but based upon 16S rRNA analysis, the organism was transferred to the genus Campylobacter [2].  	Campylobacter gracilis is microaerophilic, but is stimulated o­n media containing formate and fumerate.	Gram-negative, straight rods.  0.4 um by 4-6 um with both tapered and rounded ends.  May pit or corrode agar, or show twitching motility.  The mol% G + C of the DNA is 44-46%.    It does not ferment carbohydrates and produces mainly succinate from PYG. 	Campylobacter gracilis is a common member of subgingival plaque.  16S rRNA cloning studies indicate that it is generally the most common oral Campylobacter species identified.	Campylobactrer gracilis is a member of Socransky's Orange Complex and is associated with periodontal disease [3].  It has been recoved from primary endodontic infections [4].  It is occasionally isolated from systemic infections [1].	Int Endod J.2003 Mar;36(3):174-80[PID:12657143]|Int J Syst Bacteriol. 1981 31:432-445|J Clin Periodontol.1998 Feb;25(2):134-44[PID:9495612]|J Clin Microbiol.1985 Nov;22(5):799-802[PID:4056006]|Int J Syst Bacteriol.1995 Jan;45(1):145-52[PID:7857794]
626	Bacteria	Firmicutes	Bacilli	Bacillales	Gemellaceae	Gemella	haemolysans	Named	Oral			L14326	537	1.54	8	Neisseria haemolysans	1379	90	769	7234	SEQF2070|SEQF1019	N/A					
627	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	haemolytica	Named	Oral			U41349	0	0.00	0		45243	3	8	0	SEQF2788	N/A					
630	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Bacteroidaceae	Bacteroides	heparinolyticus	Named	Unassigned			L16487	2	0.01	409	Prevotella heparinolyticus	28113	4	13	1		N/A					
632	Bacteria	Firmicutes	Mollicutes	Mycoplasmatales	Mycoplasmataceae	Mycoplasma	hominis	Named	Unassigned			AJ002265	1	0.00	459	Asterococcus hominis|Micromyces hominis|Schizoplasma hominis	2098	1523	396	2358	SEQF1722|SEQF2524	N/A					
633	Bacteria	Proteobacteria	Gammaproteobacteria	Cardiobacteriales	Cardiobacteriaceae	Cardiobacterium	hominis	Named	Oral			M35014	47	0.13	133		2718	134	265	5157	SEQF1604	N/A					
634	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Enterobacter	hormaechei	Named	Unassigned			AJ853890	135	0.39	53	CDC Enteric Group 75	158836	52	871	10375	SEQF2432|SEQF1960|SEQF2489	N/A					
635	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Johnsonella	ignava	Named	Oral			X87152	13	0.04	244		43995	3	183	4532	SEQF1672	N/A					
636	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Bradyrhizobiaceae	Bosea	vestrisii	Named	Unassigned		CCUG 43114	U87774	4	0.01	365		151416	0	0	0		N/A					
638	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	infantis clade 638	Named	Oral			AB008315	208	0.60	30		68892	17	920	19667	SEQF1924|SEQF2212|SEQF2213|SEQF2216|SEQF2214|SEQF2215|SEQF2398	N/A					
639	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	infelix	Named	Oral			AF287802	112	0.32	63		135082	6	224	4268	SEQF1673	N/A					
641	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	influenzae	Named	Nasal			M35019	101	0.29	75	Bacterium influenzae|Coccobacillus pfeifferi|Haemophilus meningitidis|Influenza-bacillus|Mycobacterium influenzae	727	18961	24806	98811	SEQF1227|SEQF1238|SEQF1487|SEQF1758|SEQF1759|SEQF1232|SEQF1235|SEQF1236|SEQF1111|SEQF1112|SEQF1223|SEQF1224|SEQF1226|SEQF1228|SEQF1233|SEQF1234|SEQF1237|SEQF1231|SEQF2050|SEQF2051|SEQF2052|SEQF2906|SEQF2965|SEQF3016	N/A					
642	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Scardovia	inopinata	Named	Unassigned			AB029087	6	0.02	332	Bifidobacterium inopinatum	78259	7	64	2913	SEQF1654	N/A					
643	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	intermedia	Named	Oral		ATCC 25611	L16468	55	0.16	116	Prevotella intermedius|Bacteroides intermedius|Bacteroides melaninogenicus	28131	1567	406	8676	SEQF1065|SEQF2554	Formerly known as Bacteroides melaninogenicus subsp. intermedius, and then Bacteroides intermedius.   Phylogenetic analysis based o­n 16S rRNA sequence comparisons and biochemical characteristics warranted separate genus designation to the genus Prevotella, i.e., Prevotella intermedia [1].	Black pigmented colonies (0.5- 2.0 mm diameter) after anaerobic incubation for 2 days o­n hemin-containing agar media.  Hemin is required for growth, Vitamin K is stimulatory.  Colonies fluoresce under shortwave UV.	Obligately anaerobic, Gram negative, short rod (0.5 by 2 um). Moderately saccaharolytic, fermenting glucose and other carbohydrates to mainly to succinate and acetate. Cell walls contain meso-diaminopimelic acid, but not KDO or heptose.	Primarily colonizes the gingival crevice, but also found in head, neck, abdominal, and lung infections.  Has been isolated from blood.	Although commonly detected in subgingival plaque, P. intermedia has been associated with periodontal disease [2], aggressive periodontitis, necrotizing ulcerative periondontis, endodontic  infections [4], and facial gangrene (noma) [5].  Has also been linked to coronary artery disease [3].	J Clin Periodontol. 1998 Feb;25(2):134-44[PID:9495612]|Oral Microbiol Immunol. 2005 Aug;20(4):211-5[PID:15943764]|Crit Rev Oral Biol Med. 2000;11(2):159-71[PID:12002813]|J Periodontol. 2007 Sep;78(9):1724-30[PID:17760542]|Int J Syst Bacteriol. 1990 Apr;40(2):205-8[PID:2223612]
644	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	intermedius	Named	Oral			AF104671	334	0.96	19		1338	458	965	31194	SEQF2424|SEQF2361|SEQF1703|SEQF1706|SEQF2336|SEQF2363|SEQF2592|SEQF2593	N/A					
645	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	israelii	Named	Oral			X82450	107	0.31	68	Actinobacterium israeli|Brevistreptothrix israeli|Cohnistreptothrix israeli|Corynebacterium israeli|Discomyces israeli|Nocardia israeli|Oospora israeli|Proactinomyces israeli|Streptothrix israeli	1659	418	244	4	SEQF1665|SEQF2705	N/A					
646	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Kingella	kingae	Named	Unassigned			AY551999	0	0.00	0	Moraxella kingae|Moraxella kingii	504	301	33004	9710	SEQF2080|SEQF2390|SEQF2327|SEQF2556	N/A					
649	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	lactamica	Named	Oral			AJ239286	0	0.00	0	Neisseria lactamicus	486	190	994	18470	SEQF2140|SEQF2141|SEQF1261|SEQF2159	N/A					
652	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Bradyrhizobiaceae	Afipia	sp. genotype 4	Unnamed	Unassigned			U87769	1	0.00	459		1033	0	0	0		N/A					
653	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	lecithinolyticum	Named	Oral		ATCC 700332|OMZ 684	AF023040	13	0.04	244	Treponema sp. IV:17C:GF6	53418	15	114	4359	SEQF1060|SEQF2462	Member of o­ne of the 10 phylogenetic groups of oral treponemes [1,4]. Originally detected in subjects with periodontitis as not-yet-cultivated phylotype (Group IV) termed Treponema sp. IV:17C:GF6 [4].  Closest cultivable relative is Treponema maltophilum, which also falls in Group IV.	Growth o­n OMIZ-Pat-w/oPC agarose [1], are off-white, diffuse (~3 mm), subsurface colonies after 7 days incubation at 37oC.  Will not grow in chemically defined media, e.g., OMIZ-W1 [1], but requires yeast extract or Neopeptone 	Obligately anaerobic, catalase negative, helically coiled with translational motility in broth, especially in media of high viscosity [1].  Will creep o­n solid surfaces, such as agar media or glass.  Cells are Gram-negative,  0.15 um by 5 um, with a 1-2-1 periplasmic flagellar arrangement.N-acetylglucosamine is required for growth, and D-arabinose, L-fucose or D-ribose enhance growth.  Other carbohydrates do not appear to support growth. Lecithin and 1% fetal calf serum inhibits growth.  Strains are resistant to rifampicin and fosfomycin.High activities for alkaline phosphatase, acid phosphatase, B-galactosidase, B-glucuronidase, N-acetyl-B-glucosaminidase, phospholipase A, and phospholipase C	Detected in human subgingival plaque, most often in subjects with periodontitis	Association (e.g. diseased vs control sites) in patients with adult periodontitis and rapidly progressive periodontitis [1,3] and endodontic lesions [2].  Strong activities of phospholipase A and phospholipase C may serve as potential virulence factors [1]	Arch Oral Biol.2003 Jul;48(7):495-502[PID:12798152]|Int J Syst Bacteriol.1999 Oct;49 Pt 4:1329-39[PID:10555310]|J Clin Microbiol.2006 Sep;44(9):3078-85[PID:16954230]|Oral Microbiol Immunol.2000 Jun;15(3):196-202[PID:11154403]
654	Bacteria	Actinobacteria	Coriobacteriia	Eggerthellales	Eggerthellaceae	Eggerthella	lenta	Named	Unassigned			AF292375	0	0.00	0	Bacteroides lentus|Eubacterium lentum|Pseudobacterium lentum	84112	45	30	7952	SEQF1498	N/A					
655	Bacteria	Firmicutes	Clostridia	Clostridiales	Eubacteriaceae [XV]	Eubacterium	limosum	Named	Unassigned			M59120	0	0.00	0	Bacteroides limosus|Butyribacterium limosum|Butyribacterium rettgeri|Mycobacterium limosum	1736	91	24	13635	SEQF1927	N/A					
656	Bacteria	Firmicutes	Mollicutes	Mycoplasmatales	Mycoplasmataceae	Mycoplasma	lipophilum	Named	Oral			M24581	0	0.00	0	Mycoplasma lipophiliae	2117	6	10	2		N/A					
658	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	loescheii	Named	Oral			L16481	0	0.00	0	Bacteroides loescheii	840	48	415	5717	SEQF2461	N/A					
659	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Rhizobiaceae	Mesorhizobium	loti	Named	Unassigned			U50166	3	0.01	387	Mesorhizobium loti	381	36	2525	51674	SEQF1025|SEQF2763|SEQF2764	N/A					
660	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Phyllobacteriaceae	Defluvibacter	lusatiensis	Named	Unassigned			AJ132378|NR_025312	14	0.04	236	Defluvibacter lusatiensis	89772	3	22	5		N/A					
662	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Finegoldia	magna	Named	Unassigned		ATCC 15794	D14149	0	0.00	0	Diplococcus magnus|Peptococcus magnus|Peptostreptococcus magnus	1260	68	430	20646	SEQF2061|SEQF2063|SEQF1447|SEQF2435|SEQF1641|SEQF2062|SEQF2642	Finegoldia magna is not believed to be a resident of the human oral cavity. There have been no reports of its isolation verified by molecular sequence analysis.	Forms small (< 0. 5mm diameter) colonies after 48-h anaerobic incubation on Blood Agar plates.	Gram-positive, large, cocci occurring singly and in pairs, tetrads and clusters [2]. Obligately anaerobic and weakly saccharolytic, producing small amounts of acid from glucose and fructose. Ammonia is produced from glycine but not glutamine. Urease is not produced. The major end-product of metabolism is acetate. The mol % G+C content of the DNA is 32-34.	Not thought to be part of the oral microbiota but has been isolated from extra-oral soft tissue infections of the head and neck.	It is thought to be part of the female urogenital microbiota and is one of the commonest clinical anaerobic isolates from wounds and abscesses, primarily associated with the gastrointestinal and urogenital tracts. Is unusual among anaerobes in that it can cause infections, which may be serious, alone in pure culture [1].	Clin Microbiol Rev. 1998 Jan;11(1):81-120[PID:9457430]|Bergeys Manual of Systematic Bacteriology 1986; Vol. 2, pp. 1089-1090.
663	Bacteria	Proteobacteria	Gammaproteobacteria	Xanthomonadales	Xanthomonadaceae	Stenotrophomonas	maltophilia	Named	Unassigned			X95923	28	0.08	171	Pseudomonas betle|Pseudomonas maltiphilia|Xanthomonas maltiphilia|Pseudomonas beteli|Pseudomonas maltophilia|Stenotrophomonas africana|Xanthomonas maltophilia	40324	1655	10261	122431	SEQF2360|SEQF1330|SEQF1329|SEQF2174|SEQF2478|SEQF2395|SEQF2396|SEQF2300|SEQF1923|SEQF2515	N/A					
664	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	maltophilum	Named	Oral			AF023039	15	0.04	228		51160	23	38	4593	SEQF1941	N/A					
665	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	marshii	Named	Oral			AF481227	4	0.01	365		189722	4	275	4990	SEQF1915|SEQF2681	N/A					
666	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	matruchotii	Named	Oral			X82065	169	0.48	41	Actinomyces matruchoti|Bacterionema matruchotii|Cladothrix matruchoti|Oospora matruchoti	43768	18	281	11062	SEQF1013|SEQF1648	N/A					
667	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	medium	Named	Oral			AF023051	6	0.02	332		58231	25	51	4661	SEQF1940	N/A					
669	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	meningitidis	Named	Oral			AF382273	60	0.17	109	Diplokokkus intracellularis|Micrococcus intracellularis|Micrococcus meningitidis|Neisseria weichselbaumii	487	9744	76975	458330	SEQF1100|SEQF1723|SEQF1916|SEQF1276|SEQF1283|SEQF2284|SEQF2285|SEQF2287|SEQF2286|SEQF2288|SEQF2329|SEQF1275|SEQF1277	N/A					
671	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	meyeri	Named	Oral			X82451	0	0.00	0	Actinobacterium meyer|Actinobacterium meyeri	52773	71	16	3	SEQF2739	N/A					
673	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-6]	[Eubacterium] minutum	Named	Oral			U13037	19	0.05	205	Eubacterium tardum	186804	0	0	0	SEQF2644	N/A					
674	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Coriobacteriaceae	Atopobium	minutum	Named	Unassigned			X67148	0	0.00	0	Lactobacillus minutum|Bacteroides minutum|Eubacterium minutum|Lactobacillus minutus	1381	6	23	1837	SEQF2483	N/A					
676	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Proteus	mirabilis	Named	Unassigned			AF008582	30	0.09	164		584	5393	2096	39620	SEQF1802|SEQF1289|SEQF2433|SEQF2393|SEQF2394|SEQF2512|SEQF2572	N/A					
677	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	mitis	Named	Oral		NCTC 12261	AF003929	1973	5.66	2		28037	965	6936	92086	SEQF2001|SEQF2002|SEQF1067|SEQF2003|SEQF2217|SEQF2218|SEQF2219|SEQF2480|SEQF1068|SEQF2337|SEQF2338|SEQF2339|SEQF2768	Heterogenous group of viridans type of streptococci that has had taxonomic revisions.  Original type strain, NCTC 3165 (= SK51) clustered with Streptococcus gordonii strains.  Proposed NCTC 12261 be replacement type strain of S. mitis [2]. Closely related to S. pneumoniae by 16S rRNA comparisons.	Alpha-hemolytic colonies (0.7- 1.2 mm diameter) o­n blood agar and extensive greening o­n chocolate agar.	Facultatively anaerobic, Gram positive cocci, approximately 1 um in diameter, that grow in short or long chains in broth cultures.   Carbohydrates are femented primarily to lactic acid and no gas. Catalase negative.  Cell wall contains riitol teichoic acid and minimal rhamnose. Peptidoglycan type is Lys-direct. G+C content is 41 mol%.[2,3]2 biovars of S. mitis differ biochemically and serologically [2,3]	Commonly found o­n most surfaces in the human oral cavity and throat [1].  	Not usually attributed to disease, especially oral infections.May be involved in infective endocarditis, toxic shock-like syndrome, and neonatal infections.  Septicemias have been reported. 	Int J Syst Bacteriol. 1989 Oct;39(4):471-84.|J Clin Microbiol. 2005 Nov;43(11):5721-32[PID:16272510]|Bergey's Manual of Systematic Bacteriology 1986; Vol. 2, pp. 1043-1063.
678	Bacteria	Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Solobacterium	moorei	Named	Oral		JCM 10645|CIP 106864	AB031058	20	0.06	198	unclassified Clostridium	102148	28	517	5787	SEQF1152|SEQF1683|SEQF2585	Solobacterium moorei is a sufficiently close phylogenetic relative of Bulleidia extructa for the two species to be in the same genus. No formal proposal has yet been made but the name Bulleidia would take precedence by prior publication.	After 7 days incubation on Fastidious Anaerobe Agar plates (incorporating 5 % horse blood), colonies are 1 mm in diameter, circular, entire, translucent and umbonate. Growth in broth media is markedly stimulated by the addition of 0.5 % Tween 80 in the presence of fermentable sugars.	Gram-posiitive non-sporing anaerobic bacilli [1]. Cells are short and straight or slightly curved and found singly or in pairs. Strains are saccharolytic fermenting fructose, glucose, maltose and sucrose. Acetate and lactate with trace amounts of succinate are formed as the end-products of metabolism. Arginine is hydrolysed and aesculin hydrolysed by some strains. There is no growth in 20 % bile, hydrogen sulfide and indole are not produced and nitrate is not reduced. Urea is not hydrolysed. The mol % G+C content of the DNA is 37-39.	Isolated from the human tongue and dental plaque. It is a member of only a relatively small number of species that are found in both the mouth and faeces	Has been associated with halitosis [2,3] and other infections of dental origin [4,5]. There are case reports of this organism causing septicaemia and vascular infections of various types.	J Med Microbiol. 2001 Nov;50(11):947-51[PID:11699590]|J Clin Microbiol. 2003 Feb;41(2):558-63[PID:12574246]|J Am Dent Assoc. 2007 Aug;138(8):1113-20[PID:17670880]|Microbiol Immunol. 2000;44(4):223-7[PID:10832964]|J Dent Res. 2002 Nov;81(11):761-6[PID:12407091]
681	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Micrococcaceae	Rothia	mucilaginosa	Named	Oral		ATCC 25296|DSM 20746	X95483	33	0.09	152	Micrococcus mucilaginosus|Stomatococcus mucilaginosus	43675	40	151	12496	SEQF1039|SEQF2197|SEQF1724	N/A					
682	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	mucosa	Named	Oral			AJ239282	115	0.33	59	Diplococcus mucosus	488	104	375	9878	SEQF2142|SEQF1175	N/A					
683	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Simonsiella	muelleri	Named	Oral			AF328147	5	0.01	343	Caryophanon muelleri	72	1	152	4479	SEQF1652	N/A					
684	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Mitsuokella	multacida	Named	Unassigned			X81878	0	0.00	0	Bacteroides multiacidus|Mitsuokella multiacidus	52226	4	54	5121	SEQF1092	N/A					
685	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	multiformis	Named	Oral			AB182483	2	0.01	409		282402	3	136	5663	SEQF1986	N/A					
686	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	mutans	Named	Oral		ATCC 25175|NCTC10449	AJ243965	1500	4.30	3		1309	8717	40092	204358	SEQF2251|SEQF2252|SEQF2262|SEQF2253|SEQF2263|SEQF2254|SEQF2264|SEQF2255|SEQF2265|SEQF2256|SEQF2257|SEQF2258|SEQF2259|SEQF2260|SEQF1069|SEQF2245|SEQF2246|SEQF1382|SEQF2261	Belongs to a phenotypic group called the mutans streptococci which include S. sobrinus, S. ferus, S. cricetus, S. rattus and serotype "h" [4].  Phylogenetically distinct from other species of Streptococcus.  	Colonies are whitish about 0.5 to 1 mm that stick to the agar.  When media is supplemented with sucrose, puddles of liquid (e.g., soluble extracellular polysaccharide) surround the colonies.  	Facultatively anaerobic, Gram positive cocci (0.5 to 0.75 um in diameter), which occurs in pairs, or short chains [4]  Produces extracellular polysaccharides from sucrose by glucosyltransferase (e.g., glucans) and fructoosyltransferases (e.g. fructans).  These polysaccharides promotes binding to cell surfaces. Glucose is fermented to L-lactic acid with no gas.  Final pH in glucose broth cultures is 4.0 to 4.3.  Growth is not inhibited by lower pH.  Strains of S. mutans can be distinguished serologically.  Peptidoglycan contains glutamic acid, alanine, lysine, glucosamine adn muranmic acid [4]	Commonly detected o­n human teeth in supragingival plaque, and usually associated with caries.  Has been isolated from human feces.	Strong association with human dental caries, considered the primary cause of caries, although caries can occur in the absence of S. mutans.    Also associated with endodontic lesions, odontogenic infections, infectious endocarditis and cardiovascular disease [2]Is carogenic in experimental animals (rats, hamsters, gerbils, mice and monkey.Vaccines which target S. mutans are being developed to prevent caries formation [1].	Bergey's Manual of Systematic Bacteriology 1986; Vol. 2, pp. 1043-1063.|J Dent Res.2000 Feb;79(2):778-84[PID:10728980]|J Clin Microbiol.2006 Sep;44(9):3313-7[PID:16954266]|Nat Rev Immunol.2006 Jul;6(7):555-63[PID:16729013]
688	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	viscosus	Named	Oral			X82453	0	0.00	0		1656	796	145	4947	SEQF2689	Actinomyces naeslundii II sequences are essentially identical to A. viscosus.  The reference strain for this taxon is that for the type strain of A. viscosus, which is a hamster isolate.  Strains from animals are often different than those from humans, however, in this case, there appear to be a human taxon with high sequence similarity to the hamster strain.    The Oral phylotypes 169, 170, 171, 175, 176, and 688 cluster together and all are probably members of the species Actinomyces naeslundii (a fuzzy group).  At this time, the Dewhirst laboratory has not examined whether strains classified as A. naeslundii genospecies 1 or 2 fall consistently into particular phylotypes in this cluster.  The taxonomy of this group is is discussed in the references [1-3].  Over the next year, we will be sequencing a number of actinomyces strains from the Moores' collection, and should be able to clarify these issues.There is a vast literature o­n Actinomyces naeslundii which we will not attempt to review here.	Easily cultivatedMoores' Collection included 34 isolates	Gram positive, non-motile bacillusFacultative anaerobe	Common member of dental plaque	Appears to contribute to periodontal disease.  Can be invasive and cause actinomycotic infections throughout the body. 	Int J Syst Bacteriol. 1997 Jan;47(1):46-53[PID:8995800]|J Dent Res. 1993 Oct;72(10):1374-85[PID:8408879]|Int J Syst Bacteriol. 1990 Jul;40(3):273-86[PID:2397195]
689	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	naviforme	Named	Oral								77917	10	24	0		N/A					
690	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	necrophorum	Named	Oral			AF044948	0	0.00	0	Acinomyces pseudonecrophorus|Actinomyces necrophorus|Bacillus necrophorus|Bacillus necroseos|Bacillus necrosus|Bacterium necrophorum|Bacteroides necrophorus|Corynebacterium necrophorum|Fusiformis hemolyticus|Fusiformis necrophorus|Necrobacterium necrophorus|Proactinomyces necrophorus|Sphaerophorus necrophorus|Sphaerophorus pseudonecrophorus|Streptothrix necrophorus|Streptothrix necuphtora	859	957	2541	33356	SEQF2064|SEQF2347|SEQF2389|SEQF2532|SEQF2670	N/A					
691	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Mogibacterium	neglectum	Named	Oral			AB037875	3	0.01	387		114528	2	5	0		N/A					
692	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Mycobacteriaceae	Mycobacterium	neoaurum	Named	Unassigned			M29564	1	0.00	459		1795	65	324	24282	SEQF2672|SEQF2706	N/A					
693	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	nigrescens	Named	Oral			X73963	76	0.22	91		28133	336	710	14278	SEQF1893|SEQF1689|SEQF2617	N/A					
694	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-6]	[Eubacterium] nodatum	Named	Oral			Z36274	2	0.01	409		186804	0	0	0	SEQF2789	N/A					
698	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	nucleatum subsp. nucleatum	Named	Oral			AJ133496	18	0.05	211		76856	18	515	6701	SEQF2067|SEQF1078|SEQF2821|SEQF2822	Note: The taxonomy and phylogeny of the Fusobacterium nucleatum subspecies and related Fusobacterium periodontium and Fusobacterium naviforme is not well defined. The 16S rRNA sequence information is probably not reliable for putting strains into valid Fusobacterium nucleatum subspecies.					
700	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	ochracea	Named	Oral			L14635	0	0.00	0	Bacteroides ochraceus|Fusiformis nucleatus|Ristella ochraceus	1018	148	198	12982	SEQF1008|SEQF2387|SEQF1006|SEQF1904	N/A					
701	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	odontolyticus	Named	Oral			X80504	11	0.03	267		1660	131	173	8748	SEQF1657|SEQF1388|SEQF2801|SEQF2804	N/A					
703	Bacteria	Proteobacteria	Deltaproteobacteria	Desulfovibrionales	Desulfomicrobiaceae	Desulfomicrobium	orale	Named	Oral			AJ251623	2	0.01	409	Desulfomicrobium oralis	132132	3	118	2	SEQF2794	N/A					
704	Bacteria	Firmicutes	Mollicutes	Mycoplasmatales	Mycoplasmataceae	Mycoplasma	orale	Named	Oral			AY796060	0	0.00	0	Mycoplasma pharyngis|Schizoplasma orale	2121	88	83	539	SEQF2553	N/A					
705	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	oralis	Named	Oral			AY323522	43	0.12	140	Bacteroides oralis|Ristella oralis	28134	39	138	12441	SEQF1988|SEQF2523|SEQF2618	N/A					
706	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Kingella	oralis	Named	Oral			L06164	88	0.25	81	Kingella orale	505	6	121	6317	SEQF1594	N/A					
707	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	oralis subsp. oralis	Named	Oral			AF003932	20	0.06	198		1303	620	2308	41286	SEQF1998|SEQF2023|SEQF1917|SEQF2340|SEQF2341|SEQF2005|SEQF2342|SEQF2343|SEQF2399|SEQF2220|SEQF2221	N/A					
708	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	oricola	Named	Unassigned			AJ507295	1	0.00	459		206043	2	7	0		N/A					
709	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	oris	Named	Unassigned			X94229	27	0.08	176		1632	12	275	7297	SEQF1856|SEQF1910	N/A					
711	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Moraxella	osloensis	Named	Unassigned			X95304	4	0.01	365	Moraxella Bovre	34062	64	116	25	SEQF2795	N/A					
714	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	pallens	Named	Oral			Y13106	9	0.03	294	Prevotella intermedia	60133	11	280	5653	SEQF1989	N/A					
716	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	paracasei	Named	Oral			D79212	104	0.30	72		1597	542	23841	142644	SEQF1254|SEQF1777|SEQF1262|SEQF2526|SEQF2527|SEQF2528	N/A					
717	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Comamonadaceae	Variovorax	paradoxus	Named	Unassigned			D30793	7	0.02	320	Alcaligenes paradoxus	34073	70	625	66516	SEQF1395|SEQF2183|SEQF2518|SEQF2519|SEQF2586	N/A					
718	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	parainfluenzae	Named	Oral			EU083530	18	0.05	211		729	540	488	18272	SEQF2077|SEQF1239|SEQF2349|SEQF2350|SEQF2941|SEQF2966|SEQF2974|SEQF2976|SEQF2982|SEQF2983|SEQF3011|SEQF3022	N/A					
720	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Aggregatibacter	paraphrophilus	Named	Oral			M75042	6	0.02	332		732	3	0	0	SEQF2660|SEQF2750	N/A					
721	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	parasanguinis clade 721	Named	Oral			AF003933	64	0.18	102	Streptococcus parasanguis	502311	54	2812	34818	SEQF1885|SEQF2344|SEQF1919|SEQF2007|SEQF2222|SEQF2625	N/A					
723	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Coriobacteriaceae	Atopobium	parvulum	Named	Oral			AF292372	103	0.30	73	Peptostreptococcus parvulus|Streptococcus parvulus	1382	7	127	4067	SEQF1084|SEQF2726	N/A					
724	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	parvum	Named	Oral			AF033304	0	0.00	0		138851	5	10	1	SEQF1943	N/A					
725	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	pectinovorum	Named	Oral			M71237	0	0.00	0		164	30	11	5	SEQF1931	N/A					
726	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Centipeda	periodontii	Named	Oral			AJ010963	9	0.03	294		82203	11	109	5192	SEQF1958	N/A					
728	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	peroris	Named	Oral			AB008314	20	0.06	198		68891	3	76	3117	SEQF2000	N/A					
731	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Klebsiella	pneumoniae	Named	Unassigned			Y17657	4	0.01	365	Bacillus pneumoniae|Bacterium pneumoniae|Hyalococcus pneumoniae	573	16035	90301	2083384	SEQF2106|SEQF2107|SEQF2081|SEQF1715|SEQF2082|SEQF2083|SEQF1249|SEQF1250|SEQF1760	N/A					
732	Bacteria	Firmicutes	Mollicutes	Mycoplasmatales	Mycoplasmataceae	Mycoplasma	pneumoniae	Named	Unassigned			M29061	0	0.00	0	Filterable agent|Schizoplasma pneumoniae	2104	5125	1437	7869	SEQF1271|SEQF2156|SEQF2157|SEQF2503|SEQF2504|SEQF2571|SEQF2606	N/A					
733	Bacteria	Chlamydiae	Chlamydiia	Chlamydiales	Chlamydiaceae	Chlamydophila	pneumoniae	Named	Unassigned			L06108	0	0.00	0	Chlamydia pneumoniae	83558	3652	8505	15754	SEQF1182|SEQF1399|SEQF1179|SEQF1180|SEQF1181	N/A					
734	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	pneumoniae	Named	Nasal			AF003930	62	0.18	105	Diplococcus pneumoniae|Micrococcus pneumoniae	1313	26730	69729	721821	SEQF1342|SEQF2225|SEQF2307|SEQF2226|SEQF2308|SEQF2227|SEQF2228|SEQF2229|SEQF2230|SEQF2231|SEQF2232|SEQF2233|SEQF1634|SEQF2234|SEQF1635|SEQF2235|SEQF1929|SEQF1726|SEQF2236|SEQF1523|SEQF1400|SEQF2237|SEQF1642|SEQF1401|SEQF2238|SEQF1116|SEQF1402|SEQF1840|SEQF2239|SEQF1059|SEQF1348|SEQF1403|SEQF1343|SEQF1841|SEQF2240|SEQF1528|SEQF1404|SEQF1344|SEQF1842|SEQF2241|SEQF1529|SEQF1405|SEQF1345|SEQF1532|SEQF1406|SEQF2175|SEQF1407|SEQF2176|SEQF2177|SEQF2178|SEQF2179|SEQF2180|SEQF1349|SEQF1341|SEQF1346|SEQF1536|SEQF1524|SEQF1587|SEQF1525|SEQF2302|SEQF1588|SEQF1526|SEQF2303|SEQF1590|SEQF1527|SEQF2304|SEQF1589|SEQF1530|SEQF2223|SEQF2305|SEQF1531|SEQF2224|SEQF2306	N/A					
736	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Dialister	pneumosintes	Named	Oral			X82500	186	0.53	38	Bacillus pneumosintes|Bacterium pneumosintes|Bacteroides pneumosintes	39950	57	208	1	SEQF1694|SEQF2855	N/A					
737	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	polysaccharea	Named	Unassigned			L06167	0	0.00	0	Neisseria polysacchareae	489	55	934	5839	SEQF1183|SEQF1973	N/A					
738	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Anaerococcus	prevotii	Named	Unassigned			D14139	0	0.00	0	Micrococcus prevotii|Peptococcus prevotii|Peptostreptococcus prevotii	33034	12	103	8648	SEQF2036|SEQF1083	N/A					
739	Bacteria	Actinobacteria	Actinobacteria	Propionibacteriales	Propionibacteriaceae	Pseudopropionibacterium	propionicum	Named	Oral			AJ315953	107	0.31	68	Actinomyces propionicus|Arachnia propionica|Propionibacterium propionicus	1750	23	126	8807	SEQF1678	N/A					
740	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	pseudoalcaligenes	Named	Unassigned			Z76666	1	0.00	459		330	204	1017	33778	SEQF2423|SEQF2352|SEQF2714	N/A					
742	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Mogibacterium	pumilum	Named	Unassigned			AB021701	3	0.01	387		86332	1	5	0	SEQF2645|SEQF2857	N/A					
743	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	putidum	Named	Oral			AY369249	0	0.00	0		221027	6	17	10	SEQF2771	N/A					
745	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	pyogenes	Named	Oral			AB023575	0	0.00	0	Micrococcus scarlatinae|Streptococcus erysipelatos|Streptococcus hemolyticus|Streptococcus scarlatinae	1314	13690	31374	449746	SEQF1355|SEQF1353|SEQF1494|SEQF2384|SEQF1365|SEQF1356|SEQF1359|SEQF1357|SEQF2242|SEQF1358|SEQF1380|SEQF1360|SEQF1361|SEQF1362|SEQF1363|SEQF1364|SEQF2181|SEQF2301	N/A					
746	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	radicidentis	Named	Unassigned			AJ251986	0	0.00	0		111015	8	3	0	SEQF2781	N/A					
747	Bacteria	Proteobacteria	Alphaproteobacteria	Sphingomonadales	Erythrobacteraceae	Erythromicrobium	ramosum	Named	Unassigned			AF465837	2	0.01	409		35811	3	14	3		N/A					
748	Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	rectus	Named	Oral			L06973	12	0.03	255	Wolinella recta	203	358	243	5923	SEQF1089|SEQF1575|SEQF1614	N/A					Int. J. Syst. Bacteriol. (1981) 31:432-445
749	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	rhamnosus	Named	Oral			AF243146	44	0.13	139	Lactobacillus casei	47715	1391	6902	83494	SEQF1718|SEQF2373|SEQF2114|SEQF2117|SEQF2118|SEQF2119|SEQF1257|SEQF1717|SEQF1781|SEQF2499|SEQF2500|SEQF2568|SEQF2569|SEQF2701	N/A					
750	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Coriobacteriaceae	Atopobium	rimae	Named	Oral			AF292371	164	0.47	43	Lactobacillus rimae	1383	10	196	3084	SEQF1003|SEQF2780	N/A					
753	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Cronobacter	sakazakii	Named	Unassigned			AB004746	0	0.00	0	Cronobacter sakazakii|yellow -pigmented Enterobacter cloacae	28141	409	6505	77306	SEQF1185|SEQF2669|SEQF2690|SEQF2691|SEQF2692	N/A					
754	Bacteria	Firmicutes	Mollicutes	Mycoplasmatales	Mycoplasmataceae	Mycoplasma	salivarium	Named	Oral			AF125583	3	0.01	387	Asterococcus salivarius|Schizoplasma salivarium	2124	89	77	604	SEQF2607	N/A					
755	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	salivarius	Named	Oral			M58839	121	0.35	58		1304	821	1114	34851	SEQF1367|SEQF1843|SEQF2006|SEQF2345|SEQF2400|SEQF2346|SEQF1366|SEQF2913	N/A					
756	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	salivarius	Named	Oral			AF089108	33	0.09	152		1624	343	1203	29214	SEQF1782|SEQF1966|SEQF2328|SEQF2120|SEQF2121|SEQF2122|SEQF1259|SEQF2628	N/A					
757	Bacteria	Firmicutes	Bacilli	Bacillales	Gemellaceae	Gemella	sanguinis	Named	Oral			AY005051	56	0.16	114		84135	13	193	4756	SEQF2071|SEQF2710	N/A					
758	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sanguinis	Named	Oral		ATCC 10556|NCTC7863	AF003928	851	2.44	4	Streptococcus sanguinis|Streptococcus sanguis ss. carlssonii	1305	303	2034	84592	SEQF2013|SEQF2014|SEQF1070|SEQF2015|SEQF2016|SEQF2017|SEQF2018|SEQF2479|SEQF2008|SEQF2009|SEQF2010|SEQF2011|SEQF2012	Viridans type of streptococci has had taxonomic revisions [1,5].    Previously designated as strains of Streptococcus sanguis subsp. carlssonii.  Will also see in the literature as Streptococcus sanguinis, a proposed name change.  	Alpha-hemolytic colonies (0.7- 1.2 mm diameter) o­n blood agar and extensive greening o­n chocolate agar [5,6]. 	Facultatively anaerobic, Gram positive cocci, approximately 1 um in diameter, that grow in short chains in broth cultures.   Carbohydrates are femented primarily to lactic acid and no gas. Catalase negative.  Cell wall contains glycerol teichoic acid and rhamnose. Peptidoglycan type is Lys-Ala1-3 [5,6]S. sanguis is similar to S. gordonii but can be differentiated based o­n the following; DNA homology, higher G+C content of the DNA (46  vs 42 mol%), doesn't ferment amygdalin, lacks alkaline phosphatase and B-glucosaminidase activities, has IgA1 protease activity, and by multilocus enzyme analysis [5,6].4 biovars of S. sanguis differ biochemically and serologically, but all biovars possess the group H antigen [5]	Commonly found in the human oral cavity and throat.  Has been isolated from blood and heart valves of patients with bacterial endocarditis.  May be found occasionally in human feces	Generally associated with healthy oral microflora, but has been associated with intact enamel in children with no caries [2].  However, it has been suggested that it may play a role in caries production [3].Has also been associated with infective endocarditis and sinusitis.  S. sanguis and other oral species have been linked to Behcet's disease, a systemic disorder of recurrent acute inflammation, including oral aphthous ulcers, uveitis, skin lesions and genital ulcers [4]	J Gen Microbiol. 1975 Nov;91(1):92-8[PID:1202161]|J Clin Microbiol. 2002 Mar;40(3):1001-9[PID:11880430]|J Dent Res. 1993 Feb;72(2):508-16[PID:8423248]|Clin Exp Med. 2004 Sep;4(1):10-20[PID:15598081]|Int J Syst Bacteriol. 1989 Oct;39(4):471-84.|Bergey's Manual of Systematic Bacteriology 1986; Vol. 2, pp. 1043-1063.
759	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-5]	[Eubacterium] saphenum	Named	Oral			U65987	130	0.37	56	Eubacterium saphenus	186804	0	0	0	SEQF1017	N/A					
762	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Aggregatibacter	segnis	Named	Oral			M75043	13	0.04	244	Haemophilus segnis	739	3	107	3874	SEQF1957	N/A					
763	Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	showae	Named	Oral		ATCC 51146	L06974	69	0.20	98	Wolinella curva ss intermedium[5]|Wolinella X[3]	204	18	795	13910	SEQF2416|SEQF1091|SEQF2476|SEQF1731	Campylobacter showae is a common member of the human oral microbiome. 	Grows best o­n media containing formate and fumarate.  Will grow anaerobically in 80% N2, 10% CO2, 10% H2, or in a jar under microaerophilic conditions provided by a hydrogen and carbon dioxide generator such as GasPack.	Gram-negative, motile, straight rods.  Cells are 0.5 to 0.8 um wide and 2 to 5 um long with round ends and two to five unipolar flagella.  The flagella are unsheathed.  In general, C. showae strains are catalase positive while C. rectus strains are catalase negative. The G + C content of the DNA is 44-46%. 	We find that C. showae is more common in our periodontal clone libraries than C. rectus.  Prior to the recognition that the species C. showae is  distinct from C. rectus in 1993 [1],  isolates of either species would have been called C. rectus.   	Campylobacter showae is part of Socransky's Orange Complex of organisms which are associated with periodontal disease [2].  	J Showa Univ Dent Soc. 1988 8:162-165|J Clin Periodontol. 1998 Feb;25(2):134-44[PID:9495612]|J Dent Res. 2000 Feb;79(2):785-92[PID:10728981]|J Clin Periodontol. 2004 Oct;31(10):869-77[PID:15367191]|Int J Syst Bacteriol. 1993 Oct;43(4):631-9[PID:7694633]
764	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	sicca	Named	Oral			AJ239292	98	0.28	77	Diplococcos pharyngis|Diplococcus siccus	490	110	1955	16399	SEQF1264|SEQF2143|SEQF2144|SEQF2351	N/A					
767	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sinensis	Named	Oral			AF432856	33	0.09	152		176090	8	110	47	SEQF2766	N/A					
768	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	sobrinus	Named	Oral			AJ243966	74	0.21	94	Streptococcus mutans	1310	886	33811	30505	SEQF2247|SEQF2311|SEQF2517	N/A					
769	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	socranskii	Named	Oral		ATCC 35536	AF033308	75	0.22	93	Treponema socranskii subsp. buccale|Treponema socranskii subsp. socranskii|Treponema socranskii subsp. paredis|Treponema socranskii subsp. 04|Treponema socranskii subsp. A|Treponema socranskii subsp. B	53419	77	468	13189	SEQF1942|SEQF1905|SEQF2757|SEQF2758	There are reference sequences for each of the six subspecies.					
775	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sputigena	Named	Oral			X67609	38	0.11	148		1019	102	194	5268	SEQF1576|SEQF2362	N/A					
776	Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	sputorum	Named	Unassigned			AF022768	0	0.00	0	Vibrio sputorum	206	73	65	25		N/A					
777	Bacteria	Synergistetes	Synergistia	Synergistales	Dethiosulfovibrionaceae	Jonquetella	anthropi	Named	Oral		CCUG 53819|CIP 109408	AF481216	5	0.01	343		428712	5	67	4912	SEQF1476|SEQF2078|SEQF1612	N/A	Strains form small (c 0.5 mm in diameter) colonies on Columbia sheep blood agar after 5 days incubation [1].	Strains are asaccharolytic and generally unreactive in biochemical tests. Gas is not produced. Metabolic end-products of metabolism are acetate, propionate and isovalerate. The major cellular fatty acids are  iso-C15:0 and C16:0. The mol % G+C content of the DNA is 59.4 [1].	Found in the human mouth	Has been isolated from an endodontic infection and clinical samples obtained from breast and pelvic abscesses, peritoneal fluid and a sebaceous cyst.	Int J Syst Evol Microbiol. 2007 Dec;57(Pt 12):2743-8[PID:18048718]
780	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonella	sp. HMT 780	Unnamed	Oral			DQ087189	28	0.08	171		671229	0	182	3172	SEQF1859	N/A					
781	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	saccharolytica	Named	Oral			TBS	8	0.02	309		633701	1	484	6843	SEQF1946|SEQF2685	N/A					
782	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	fusca	Named	Oral		JCM 17724|DSM 22504|CCUG 57946|W1435	AB683252|FJ545433	1	0.00	459	Prevotella genomosp. T2 Strain W1435| Prevotella sp. oral taxon 782| F0012 	589436	1	243	1937	SEQF2650|SEQF2678|SEQF2753	Prevotella fusca sp. nov. and Prevotella scopos sp. nov., isolated from the human oral cavity.   PMID: 20495041					
785	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	uenonis	Named	Unassigned			TBS [AY570514]	0	0.00	0		281920	2	818	5789	SEQF1796|SEQF2674|SEQF2694	N/A					
786	Bacteria	Firmicutes	Bacilli	Bacillales	Paenibacillaceae	Paenibacillus	phoenicis	Named	Unassigned		NBRC 106274	TBS [AM283040]	0	0.00	0		554117	0	453	8596	SEQF1658	N/A					
787	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Bacteroidaceae	Bacteroides	pyogenes	Named	Unassigned		F0041	AB200228	0	0.00	0	Bacteroides tectum	310300	6	961	19709	SEQF2453|SEQF2665|SEQF2666|SEQF2667|SEQF2668	N/A					
788	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Anaerococcus	tetradius	Named	Unassigned			AF542234	1	0.00	459	Gaffkya anaerobius|Peptostreptococcus tetradius|Tetracoccus anaerobius	33036	3	358	4110	SEQF1728|SEQF3021	N/A					
790	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilaceae [G-2]	bacterium HMT 790	Phylotype	Unassigned			AY134899	1	0.00	459		1570339	0	0	0		N/A					
794	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	multisaccharivorax	Named	Unassigned			AB200414	12	0.03	255		310514	4	48	5383	SEQF1987	N/A					
795	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	shahii	Named	Oral			AB108825	0	0.00	0		228603	4	290	2052	SEQF2687	N/A					
801	Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae	Enterococcus	casseliflavus	Named	Unassigned			AF039899	282	0.81	22	Enterococcus flavescens|Streptococcus casseliflavus|Streptococcus faecium	37734	207	1167	39569	SEQF1961|SEQF1732|SEQF1733|SEQF1734|SEQF2549	N/A					
802	Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae	Enterococcus	saccharolyticus	Named	Unassigned			AF061004	0	0.00	0	Streptococcus saccharolyticus	41997	17	174	11982	SEQF2060|SEQF2533	N/A					
803	Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae	Enterococcus	italicus	Named	Unassigned		CCUG 50447|DSM 15952	AJ626902	47	0.13	133	Enterococcus saccharomininmus	246144	17	431	4785	SEQF2019	According to Naser et al. 2006, Enterococcus saccharominimus Vancanneyt et al. 2004 is a later heterotypic synonym of Enterococcus italicus Fortina et al. 2004.					
804	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Lactococcus	lactis	Named	Oral			M58837	208	0.60	30	Bacterium lacti|Bacterium lactis|Streptococcus lactis	1358	4733	14041	130303	SEQF2374|SEQF2150|SEQF2151|SEQF1500|SEQF1501|SEQF1719|SEQF2473|SEQF2152|SEQF1482|SEQF2559|SEQF2560|SEQF2561|SEQF2570	N/A					
805	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	pallidum	Named	Unassigned			M88726	0	0.00	0	Microspironema pallidum|Spirillum pallidum|Spirochaeta pallida|Spironema pallidum	160	4644	1574	28211	SEQF1328|SEQF1326|SEQF1350|SEQF2429|SEQF2182|SEQF1419|SEQF1062|SEQF1499|SEQF2545	N/A					
806	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Atopobiaceae	Olsenella	profusa	Named	Oral			AF292374	33	0.09	152		138595	5	189	5299	SEQF1933	N/A					
807	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Atopobiaceae	Olsenella	sp. HMT 807	Unnamed	Oral			EU592964	8	0.02	309	F0004	712411	0	8	0	SEQF2646|SEQF2751	N/A					
808	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Tannerella	sp. HMT 808	Phylotype	Oral			AF385565	1	0.00	459	Oral Clone BU045	712711	0	1	0		N/A					
809	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Atopobiaceae	Olsenella	sp. HMT 809	Unnamed	Unassigned			EU592965	0	0.00	0	F0206	661086	0	26	3793	SEQF1670	N/A					
810	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Coriobacteriaceae	Atopobium	sp. HMT 810	Unnamed	Unassigned			EU592966	1	0.00	459		712158	0	148	3808	SEQF2455	N/A					
811	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Arcanobacterium	haemolyticum	Named	Unassigned			AJ234059	0	0.00	0	Corynebacterium haemolyticum	28264	139	57	5200	SEQF1187	N/A					
812	Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	pylori	Named	Unassigned			M88157	0	0.00	0	Campylobacter pylori|Campylobacter pyloridis|Helicobacter nemestrinae	210	35037	72916	807555	SEQF2409|SEQF2410|SEQF1351|SEQF1240|SEQF1352|SEQF1244|SEQF1245|SEQF1714|SEQF1243|SEQF1117|SEQF1118|SEQF1643|SEQF1644|SEQF1119	N/A					
813	Bacteria	Firmicutes	Bacilli	Lactobacillales	Carnobacteriaceae	Dolosigranulum	pigrum	Named	Nasal			X70907	0	0.00	0		29394	18	32	3381	SEQF2059	N/A					
814	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Coriobacteriaceae	Atopobium	vaginae	Named	Unassigned			AF325325	0	0.00	0		82135	75	232	5167	SEQF2037|SEQF1729	N/A					
815	Archaea	Euryarchaeota	Methanobacteria	Methanobacteriales	Methanobacteriaceae	Methanobrevibacter	oralis	Named	Oral				0	0.00	0		66851	24	94	4	SEQF2671	N/A					
816	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	coleohominis	Named	Unassigned			AM113776	3	0.01	387	Lactobacillus coleohominis	181675	0	78	3304	SEQF1922	N/A					
817	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	crispatus	Named	Oral			Y17362	10	0.03	280	Eubacterium crispatum	47770	202	3263	40308	SEQF1368|SEQF2420|SEQF2421|SEQF1762|SEQF1763|SEQF1764|SEQF2084|SEQF2085|SEQF1930|SEQF2086	N/A					
818	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	reuteri clade 818	Named	Unassigned			L23507	0	0.00	0	Lactobacillus fermentum	1598	770	4212	51006	SEQF2105|SEQF1369|SEQF2115|SEQF2116|SEQF1120|SEQF1121|SEQF1778|SEQF1095|SEQF1779|SEQF1780|SEQF2544|SEQF2567	N/A					
819	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	johnsonii	Named	Unassigned			AJ002515	1	0.00	459		33959	219	1052	27267	SEQF1716|SEQF2103|SEQF2111|SEQF1026|SEQF1776|SEQF2611	N/A					
820	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 820	Unnamed	Oral			AF537212	0	0.00	0	Prevotella sp. P2A_FAAD4	838	0	0	0	SEQF2655	N/A					
821	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	ducreyi	Named	Unassigned			AY513483	0	0.00	0	Bacillus ulceris|Coccobacillus ducreyi	730	789	733	6382	SEQF1027	N/A					
822	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Mycobacteriaceae	Mycobacterium	tuberculosis	Named	Unassigned			X52917	0	0.00	0	Bacterium tuberculosis|Bacillus tuberculosis	1773	47670	162357	6722923	SEQF1135|SEQF1032|SEQF1786|SEQF1096|SEQF1787|SEQF1129|SEQF1788|SEQF1034|SEQF1789|SEQF2138|SEQF1370|SEQF1371|SEQF2283|SEQF1122|SEQF1123|SEQF1124|SEQF2299|SEQF1125|SEQF1127|SEQF1128|SEQF1131|SEQF1132|SEQF1133|SEQF1130|SEQF1134	N/A					
823	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Mycobacteriaceae	Mycobacterium	leprae	Named	Unassigned			X53999	0	0.00	0	Bacillus leprae	1769	6105	676	11071	SEQF1035|SEQF1645	N/A					
824	Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae	Bacillus	anthracis	Named	Unassigned			AF155951	0	0.00	0	Bacillus cereus|Bacteridium anthracis	1392	4959	5307	240770	SEQF1709|SEQF1139|SEQF1140|SEQF1155|SEQF1141|SEQF1046|SEQF1037|SEQF1158|SEQF1038|SEQF1143|SEQF1040|SEQF1041|SEQF1150|SEQF1044|SEQF1151|SEQF1042|SEQF1153|SEQF1043|SEQF2323|SEQF1708	Note:  The 16S rRNA sequence for B. anthracis is almost identical to that for B. cereus and B. thuringiensis.  					
825	Bacteria	Firmicutes	Bacilli	Bacillales	Listeriaceae	Listeria	monocytogenes	Named	Unassigned			EU090894	0	0.00	0	Bacterium monocytogenes|Corynebacterium infantisepticum|Corynebacterium parvulum|Erysipelothrix monocytogenes|Listerella hepatolytica	1639	14669	41951	965051	SEQF1534|SEQF1051|SEQF1539|SEQF1574|SEQF1542|SEQF1543|SEQF1456|SEQF1544|SEQF1459|SEQF1545|SEQF1463|SEQF1546|SEQF1720|SEQF1466|SEQF1479|SEQF1547|SEQF1548|SEQF1549|SEQF1551|SEQF1552|SEQF1553|SEQF1050|SEQF1052|SEQF2153|SEQF2154|SEQF2155|SEQF2123|SEQF2124|SEQF2125|SEQF2126|SEQF1721|SEQF1053	N/A					
827	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Yersinia	pestis	Named	Unassigned			L37604	0	0.00	0	Bacterium pestis|Bacillus pestis|Pasteurella pestis|Pestisella pestis|Yersinia pseudotuberculosis	632	4014	250505	509118	SEQF1564|SEQF1556|SEQF1557|SEQF1558|SEQF1559|SEQF1560|SEQF1561|SEQF1562|SEQF1555|SEQF1563|SEQF1054|SEQF1565|SEQF1082|SEQF1566|SEQF1055|SEQF1567|SEQF1056|SEQF1568|SEQF1844|SEQF1057|SEQF2184|SEQF1569|SEQF1099|SEQF2185|SEQF2186|SEQF2188	N/A					
828	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Alcaligenaceae	Bordetella	pertussis	Named	Unassigned			U04950	0	0.00	0	Microbe de|Bacterium tussis-convulsivae|Haemophilus pertussis|Hemophilus pertussis|Microbe de la coqueluche	520	6181	14111	157883	SEQF2405|SEQF1086|SEQF2055|SEQF2266|SEQF2401|SEQF2402|SEQF2403|SEQF2404	N/A					
829	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Gardnerella	vaginalis	Named	Vaginal			EF194095	1	0.00	459	Corynebacterium vaginale|Haemophilus hemolyticus|Haemophilus vaginalis	2702	1326	8998	79879	SEQF2279|SEQF2068|SEQF2280|SEQF2281|SEQF2282|SEQF1101|SEQF1757|SEQF1577|SEQF2049|SEQF2491|SEQF2492	N/A					
830	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Mobiluncus	mulieris	Named	Unassigned			AJ427625	0	0.00	0	Falcivibrio grandis	2052	24	438	15445	SEQF1784|SEQF1785|SEQF2127|SEQF2128	N/A					
831	Bacteria	Firmicutes	Bacilli	Lactobacillales	Carnobacteriaceae	Alloiococcus	otitis	Named	Unassigned			AY957475	0	0.00	0	Alloiococcus otitidis	1652	10	66	3262	SEQF2412	N/A					
832	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Turicella	otitidis	Named	Unassigned			X73976	0	0.00	0	CDC coryneform group ANF-1 like|Corynebacterium otitidis	29321	19	399	5431	SEQF2407	N/A					
833	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Moraxella	catarrhalis	Named	Nasal			U10876	0	0.00	0	Moraxella Bovre|Branhamella catarrhalis|Mikrokkokus catarrhalis	480	2148	2407	35301	SEQF2129|SEQF2130|SEQF2131|SEQF2132|SEQF2133|SEQF2134|SEQF2135|SEQF1968|SEQF2136|SEQF2137|SEQF1102|SEQF2879|SEQF2946	N/A					
834	Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	otitidis	Named	Unassigned			AY953147	4	0.01	365		319939	7	273	804	SEQF2695	N/A					
835	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	mucifaciens	Named	Oral			Y11200	0	0.00	0		57171	6	18	2		N/A					
836	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilus	lacrimalis	Named	Oral		F0141		22	0.06	188	Strain F0141	33031	0	315	2833	SEQF1795|SEQF1681|SEQF2505|SEQF2727	N/A					
837	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Sneathia	sanguinegens	Named	Oral			L37789	0	0.00	0	Leptotrichia sanguinegens	40543	7	9	2	SEQF2932	N/A					
838	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	iners	Named	Vaginal			Y16329	4	0.01	365	Lactobacillus sp. EF group 47	147802	48	1106	26827	SEQF2097|SEQF2098|SEQF2099|SEQF2100|SEQF2101|SEQF2102|SEQF2089|SEQF2090|SEQF2091|SEQF2092|SEQF2093|SEQF2094|SEQF1770|SEQF2095|SEQF2096	N/A					
839	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	jensenii	Named	Vaginal			AF243159	0	0.00	0		109790	89	599	15357	SEQF1104|SEQF1649|SEQF1771|SEQF1772|SEQF1773|SEQF1774|SEQF1775	N/A					
840	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilus	indolicus	Named	Unassigned			NR_042753	4	0.01	365	Schleiferella indolica|Micrococcus indolicus|Peptococcus indolicus|Peptostreptococcus indolicus	33030	5	517	4523	SEQF1974	N/A					
841	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Megasphaera	sp. HMT 841	Phylotype	Unassigned			DQ666094	0	0.00	0		906	0	0	0		N/A					
842	Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Campylobacteraceae	Campylobacter	ureolyticus	Named	Unassigned	0		L04321	0	0.00	0	Bacteroides corrodens|Bacteroides ureolyticus	827	15	363	6611	SEQF2613|SEQF2614	Was previously called Bacteroides ureolyticus.					
843	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Dialister	micraerophilus	Named	Oral			AF473837	13	0.04	244	Dialister micraerophilus	309120	3	157	4926	SEQF1959	N/A					
844	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Sneathia	amnii [Not Validly Published]	Named	Oral			AY078425	0	0.00	0	Leptotrichia amnionii	187101	0	0	0	SEQF2778	Not validly named, but name Leptotrichia amnionii is commonly used.  Should be validly named as a member of the genus Sneathia (see tree).					
845	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	goodfellowii	Named	Oral								157692	3	432	6360	SEQF1600|SEQF2629	N/A					
847	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 847	Unnamed	Unassigned			FJ577250					1785996	0	0	0	SEQF1609|SEQF2790	N/A					
848	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Peptidiphaga	gingivicola	Named	Oral			GQ131416					1823756	0	30	5183	SEQF1660	N/A					
849	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	johnsonii	Named	Oral		ATCC 49338|JCM 16129	AB545933|GU470900				Previously provisional taxon C25	544581	2	1965	12553	SEQF1668|SEQF2449|SEQF2317	Was previously provisional taxon C25 in RefSeq Extended V1.1					
850	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	cardiffensis	Named	Oral		CCUG 44997|DSM 15803	AJ421779|GU470888				Previously provisional taxon A75	181487	3	82	3964	SEQF1667	Previously provisional taxon A75.					
851	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	haemolyticus	Named	Oral		ATCC 33390	HM596277|JN227763					726	56	1577	21066	SEQF2072|SEQF2348|SEQF2073|SEQF2074|SEQF2075|SEQF2076|SEQF1850|SEQF2997	N/A					
852	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	massiliensis	Named	Oral		JCM 16130	AB545934				Previously provisional taxon C93	461393	2	538	8156	SEQF2385|SEQF1903	Was previously provisional taxon C93 in RefSeq Extended V1.1					
853	Bacteria	Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium	urealyticum	Named	Unassigned		ATCC 43042|DSM 7109	NR_027597				Previously provisional taxon C28 |CDC coryneform group D-2	43771	102	89	11149	SEQF2440|SEQF1976|SEQF2912|SEQF2970	Was previously provisional taxon C28 in RefSeq Extended V1.1					
854	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Burkholderiaceae	Ralstonia	pickettii	Named	Unassigned		ATCC 27511|DSM 6297	NR_043152				Previously provisional taxon C02	329	186	602	68393	SEQF2172|SEQF1977|SEQF2514|SEQF2603	Was previously provisional taxon C02 in RefSeq Extended V1.1					
855	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Dermacoccaceae	Kytococcus	sedentarius	Named	Unassigned		ATCC 14392|DSM 20547	AJ717359				Previously provisional taxon A81| Micrococcus sedentarius	1276	13	43	7637	SEQF1978	Was previously provisional taxon A81 in RefSeq Extended V1.1					
856	Bacteria	Actinobacteria	Actinobacteria	Micrococcales	Sanguibacteraceae	Sanguibacter	keddieii	Named	Unassigned		ATCC 51767|DSM 10542	NR_027595				Previously provisional taxon D35	60920	5	19	11137	SEQF1979	Was previously provisional taxon D35 in RefSeq Extended V1.1					
857	Bacteria	Proteobacteria	Alphaproteobacteria	Rhodobacterales	Rhodobacteraceae	Rhodobacter	capsulatus	Named	Unassigned		ATCC 11166|DSM 1710	AB017798|D16428				Previously provisional taxon A00	1061	1401	1181	41304	SEQF1980|SEQF2619|SEQF2620|SEQF2621|SEQF2622|SEQF2623|SEQF2624	Was previously provisional taxon A00 in RefSeq Extended V1.1					
858	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Comamonadaceae	Comamonas	testosteroni	Named	Oral		ATCC 11996|DSM 50244	NR_029161				Previously provisional taxon A85	285	326	1148	52247	SEQF2057|SEQF2058|SEQF2371|SEQF1981|SEQF2047	Was previously provisional taxon A85 in RefSeq Extended V1.1					
859	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Anaerococcus	lactolyticus	Named	Unassigned		ATCC 51172|DSM 7456|JCM 8140	AB673373				Previously provisional taxon A64	33032	6	816	4425	SEQF1982|SEQF2958	Was previously provisional taxon A64 in RefSeq Extended V1.1					
860	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	gonidiaformans	Named	Unassigned		ATCC 25563|DSM 19810	GQ179686|M58679				Previously provisional taxon B92	849	12	265	6426	SEQF1983|SEQF2550	Was previously provisional taxon B92 in RefSeq Extended V1.1					
861	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	plantarum	Named	Unassigned		ATCC 14917|DSM 20174	EU559598				Previously provisional taxon D15	1590	2847	9547	106737	SEQF2441|SEQF1965|SEQF2104|SEQF2112|SEQF2113|SEQF1984|SEQF2498|SEQF2525|SEQF2542|SEQF2543	Was previously provisional taxon D15 in RefSeq Extended V1.1					
862	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	longum	Named	Unassigned		ATCC 15707|DSM 20219	NR_043437				Previously provisional taxon B54	216816	835	4656	101499	SEQF2054|SEQF2367|SEQF2368|SEQF2369|SEQF2370|SEQF1952|SEQF2040|SEQF2041|SEQF2042|SEQF2043|SEQF2044|SEQF2045|SEQF2046|SEQF2248|SEQF2249	Was previously provisional taxon B54 in RefSeq Extended V1.1.  Original reference seq for B54, AM990172, was chimeric.Reference sequence NR_043437  is for Bifidobacterium longum subsp. infantis					
863	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 863	Unnamed	Oral			AM420168				Previously provisional taxon B29	1227265	0	399	5523	SEQF2319	Was previously provisional taxon B29 in RefSeq Extended V1.1					
864	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 864	Unnamed	Oral			GU561335				Previously provisional taxon E54	1316593	0	0	0	SEQF2318	Was previously provisional taxon E54 in RefSeq Extended V1.1.  Original RefSeq for E54, GU431264, was o­nly 500 bases.					
865	Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacterales	Enterobacteriaceae	Kluyvera	ascorbata	Named	Unassigned		ATCC 33433|DSM 4611	AF176566|NR_028677				Previously provisional taxon B86	51288	46	344	4716	SEQF2315|SEQF2711	Was previously provisional taxon B86 in RefSeq Extended V1.1					
866	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	graevenitzii	Named	Oral		DSM 15540|CCUG 27294	NR_042167				Previously provisional taxon A50	55565	9	208	7344	SEQF2031|SEQF2450	Was previously provisional taxon A50 in RefSeq Extended V1.1.  Original RefSeq for A50, AF385517, is chimeric.					
869	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-1]	bacterium HMT 869	Phylotype	Oral			KM018321					1540868	0	0	0							
870	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-6]	bacterium HMT 870	Phylotype	Oral			KM018322					1540867	0	0	0							
871	Bacteria	Gracilibacteria (GN02)	Gracilibacteria (GN02) [C-1]	Gracilibacteria (GN02) [O-1]	Gracilibacteria (GN02) [F-1]	Gracilibacteria (GN02) [G-1]	bacterium HMT 871	Phylotype	Oral								1226338	0	0	0		N/A					
872	Bacteria	Gracilibacteria (GN02)	Gracilibacteria (GN02) [C-1]	Gracilibacteria (GN02) [O-1]	Gracilibacteria (GN02) [F-1]	Gracilibacteria (GN02) [G-1]	bacterium HMT 872	Phylotype	Oral								1226339	0	0	0		N/A					
873	Bacteria	Gracilibacteria (GN02)	Gracilibacteria (GN02) [C-2]	Gracilibacteria (GN02) [O-2]	Gracilibacteria (GN02) [F-2]	Gracilibacteria (GN02) [G-2]	bacterium HMT 873	Phylotype	Oral								1226340	0	0	0		N/A					
874	Bacteria	Absconditabacteria (SR1)	Absconditabacteria (SR1) [C-1]	Absconditabacteria (SR1) [O-1]	Absconditabacteria (SR1) [F-1]	Absconditabacteria (SR1) [G-1]	bacterium HMT 874	Phylotype	Oral								221235	0	0	0	SEQF2626	N/A					
875	Bacteria	Absconditabacteria (SR1)	Absconditabacteria (SR1) [C-1]	Absconditabacteria (SR1) [O-1]	Absconditabacteria (SR1) [F-1]	Absconditabacteria (SR1) [G-1]	bacterium HMT 875	Phylotype	Oral								221235	0	0	0		N/A					
876	Bacteria	Firmicutes	Clostridia	Clostridiales	Clostridiales [F-3]	Clostridiales [F-3][G-1]	bacterium HMT 876	Unnamed	Unassigned							F0540	186802	0	0	0	SEQF2456	N/A					
877	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 877	Unnamed	Oral								1227263	0	878	5029	SEQF2313	N/A					
878	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 878	Unnamed	Oral								1316596	0	0	0	SEQF2314	N/A					
879	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 879	Unnamed	Oral								1227267	0	340	4876	SEQF2353|SEQF2769	N/A					
880	Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae	Enterococcus	durans	Named	Unassigned		ATCC 19432	AJ420801				Streptococcus durans	53345	199	1137	15729	SEQF2484|SEQF2417|SEQF2534	N/A					
881	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	buchneri	Named	Unassigned		ATCC 4005	AB205055					1581	155	535	18875	SEQF2427|SEQF2428|SEQF2418	N/A					
882	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	panis	Named	Oral		CCUG 37482	X94230					47493	27	56	40	SEQF2809	N/A					
883	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	pentosus	Named	Unassigned		ATCC 8041	D79211					1589	231	443	10605	SEQF2419	N/A					
884	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	rapi	Named	Unassigned		YIT 11204|DSM 19907	NR_041659					481723	5	15	4	SEQF2810	N/A					
885	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	scopos	Named	Oral		CCUG 57945|DSM 22613|JCM 17725|W2052	AB683253				Prevotetella genomosp. T2 strain W1435	589437	1	232	1974	SEQF2651|SEQF2686|SEQF2922	N/A					
886	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	cristatus clade 886	Named	Oral		DSM 19165|CCUG 48365|LMG 21535	AY099095					45634	20	37	6098		2017-09-08 (TC) This species was renamed to Streptococcus cristatus (HOT578) based on the genomic study published by Jensen et. al. (2016). http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.001433. However since the 16S rRNA sequence AY099095 that represents HOT886 is outside the HOT578 clade on the 16S rRNA phylogenetic tree, this sequence may represent a distinct strain for the species, we retained this HOT but change the name to "Streptococcus cristatus clade oligofermentans" so that future sequencing study can distinguish this sequences from others of this species.					
887	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonella	denticariosi	Named	Oral		JCM 15641|DSM 19009|CCUG 54362|RBV 106	EF185167					419208	4	13	5	SEQF2811	N/A					
888	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	dentalis	Named	Oral		CCUG 48064|DSM 19115|R-18165	AJ697609					272548	2	204	2168	SEQF2573	N/A					
889	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	breve	Named	Unassigned		ATCC 15700|CCUG 30511|DSM 20213	AB006658					1685	404	1020	41494	SEQF2414|SEQF2415|SEQF2425|SEQF2426|SEQF2413|SEQF2535|SEQF2576	N/A					
890	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	subtile	Named	Unassigned		ATCC 27537|CCUG 34980|DSM 20096|JCM 5822	D89378|D89329					77635	2	114	4394	SEQF2577|SEQF2708	N/A					
891	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	scardovii	Named	Unassigned		ATCC BAA-773|CCUG 13008|DSM 13734|JCM 12489	AB437363					158787	6	58	2492	SEQF2707	N/A					
892	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 892	Unnamed	Oral								1321785	0	193	4546	SEQF2454	N/A					
893	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	oris	Named	Oral		JCM 16131|ATCC 27044	AB545935|GQ421308				Actinomyces naeslundii genospecies 2	544580	28	2317	2900	SEQF2431|SEQF2806	Actinomyces oris HOT-893 is part of a cluster of taxa that includes Actinomyces sp. HOT-169, 170, 171, and 175.  Whether these taxa should be lumped into a single large fuzzy species or kept separate as distinct genotypes will require further investigation.					
894	Bacteria	Proteobacteria	Betaproteobacteria	Burkholderiales	Comamonadaceae	Ottowia	sp. HMT 894	Unnamed	Unassigned			JQ406530				Comamonadaceae bacterium K1|Comamonadaceae bacterium clone BL117	1658672	0	0	0	SEQF2659|SEQF2749	N/A					
895	Bacteria	Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	animalis	Named	Unassigned			D86185|AB050136				Bifidobacterium lactis	28025	341	808	51660	SEQF2463|SEQF2475|SEQF2464|SEQF2465|SEQF2466|SEQF2467|SEQF2468|SEQF2469|SEQF2470|SEQF2471|SEQF2472|SEQF2474	N/A					
896	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 896	Phylotype	Oral			JQ406543				Actinomyces sp. clone FL377|Actinomyces genomospecies K1	1654	0	0	0		N/A					
897	Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	sp. HMT 897	Phylotype	Oral			KC203057				Actinomyces sp. clone HS14_2W_C6	1654	0	0	0		N/A					
898	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Aggregatibacter	sp. HMT 898	Phylotype	Oral			KC203060				Aggregatibacter sp. HS19_2W_I12	416916	0	0	0		N/A					
899	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-3]	bacterium HMT 899	Phylotype	Unassigned			JQ406536				Bacteroidales bacterium K1|Bacteroidales bacterium clone BL234	200643	0	0	0		N/A					
900	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Bergeyella	sp. HMT 900	Phylotype	Oral			KC203058				Bergeyella sp. clone HS1_1W_C3	59735	0	0	0		N/A					
901	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 901	Phylotype	Unassigned			JQ406535				Capnocytophaga genomospecies K1|Capnocytophaga sp. clone BL218	1016	0	0	0		N/A					
902	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 902	Phylotype	Oral			JQ406542				Capnocytophaga genomospecies K2|Capnocytophaga sp. clone FL163	1016	0	0	0		N/A					
903	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Capnocytophaga	sp. HMT 903	Phylotype	Oral			KC203061				Capnocytophaga sp. HS5_2W_I24	1016	0	0	0		N/A					
904	Bacteria	Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Erysipelotrichaceae [G-1]	bacterium HMT 904	Phylotype	Oral			JQ406531				Erysipelotrichaceae bacterium clone BL163|Erysipelotrichaceae bacterium K1	128827	0	0	0		N/A					
905	Bacteria	Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Erysipelotrichaceae [G-1]	bacterium HMT 905	Phylotype	Oral			JQ406538				Erysipelotrichaceae bacterium clone DL151|Erysipelotrichaceae bacterium K2	128827	0	0	0		N/A					
906	Bacteria	Firmicutes	Mollicutes	Mollicutes [O-2]	Mollicutes [F-2]	Mollicutes [G-2]	bacterium HMT 906	Phylotype	Oral			KC203059				Firmicutes bacterium clone CP6_C1|Erysipelotrichaceae CP6_C1	31969	0	0	0		N/A					
907	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Bergeyella	sp. HMT 907	Phylotype	Oral			JQ406533				Bergeyella bacterium K1|Flavobacteriaceae bacterium clone BL190	59735	0	0	0		N/A					
908	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	sp. HMT 908	Phylotype	Oral			JQ406529				Haemophilus sp. clone AL159|Haemophilus genomospecies K1	724	0	0	0		N/A					
909	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Leptotrichiaceae	Leptotrichia	sp. HMT 909	Phylotype	Oral			KC203062				Leptotrichia sp. clone CP4_C6	32067	0	0	0		N/A					
910	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Stomatobaculum	sp. HMT 910	Phylotype	Oral			JQ406544				Moryella sp. clone CL133|Moryella genomospecies K1	1213720	0	0	0		N/A					
911	Bacteria	Bacteroidetes	Bacteroidetes [C-1]	Bacteroidetes [O-1]	Bacteroidetes [F-1]	Bacteroidetes [G-7]	bacterium HMT 911	Phylotype	Unassigned			JQ406540				Porphyromonadaceae bacterium clone DL325|Porphyromonodaceae bacterium K1	200643	0	0	0		N/A					
912	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Alloprevotella	sp. HMT 912	Phylotype	Oral			KC203063|JQ406532				Prevotella sp. clone BL176|Prevotella genomospecies K1|Alloprevotella sp. clone clone HS3_1W_C6	1283313	0	0	0		N/A					
913	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Alloprevotella	sp. HMT 913	Phylotype	Oral			JQ406534				Prevotella sp. clone BL216|Prevotella genomospecies K2	1283313	0	0	0		N/A					
914	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Alloprevotella	sp. HMT 914	Phylotype	Oral			JQ406539				Prevotella sp. clone DL303|Prevotella genomospecies K3	1283313	0	0	0		N/A					
915	Bacteria	Actinobacteria	Actinobacteria	Propionibacteriales	Propionibacteriaceae	Propionibacteriaceae [G-1]	bacterium HMT 915	Phylotype	Oral			KC203064				Propionibacteriaceae bacterium clone HS10_B_C3	31957	0	0	0		N/A					
916	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Tannerella	sp. HMT 916	Phylotype	Oral			KC203065				Tannerella sp. clone CP6_C2	195950	0	0	0		N/A					
917	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonella	sp. HMT 917	Phylotype	Oral			JQ406541				Veillonella sp. clone EL130|Veillonella genomospecies K1	29465	0	0	0		N/A					
918	Bacteria	Firmicutes	Negativicutes	Veillonellales	Veillonellaceae	Veillonellaceae [G-1]	bacterium HMT 918	Phylotype	Unassigned			JQ406537				Veillonellaceae bacterium clone DL111	31977	0	0	0		N/A					
919	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 919	Unnamed	Oral								970	0	0	0							
920	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 920	Unnamed	Oral								1884263	0	0	0	SEQF2653|SEQF2919						
921	Bacteria	Firmicutes	Bacilli	Bacillales	Paenibacillaceae	Paenibacillus	glucanolyticus	Named	Unassigned		W10507						59843	2	16	1	SEQF2661|SEQF2880						
922	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-7]	bacterium HMT 922	Phylotype	Oral			JF212838					186804	0	0	0							
924	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Lachnospiraceae [G-9]	bacterium HMT 924	Phylotype	Unassigned			AY959209					186803	0	0	0							
927	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 927	Phylotype	Unassigned			GQ039278					157	0	0	0							
928	Bacteria	Firmicutes	Bacilli	Bacillales	Gemellaceae	Gemella	sp. HMT 928	Unnamed	Oral								1785995	0	0	0	SEQF2783						
929	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptoniphilaceae	Peptoniphilaceae [G-3]	bacterium HMT 929	Unnamed	Unassigned								1570339	0	0	0							
930	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Porphyromonas	sp. HMT 930	Phylotype	Oral			JQ468499					836	0	0	0							
931	Bacteria	Bacteroidetes	Flavobacteriia	Flavobacteriales	Flavobacteriaceae	Bergeyella	sp. HMT 931	Phylotype	Oral			JQ447552					59735	0	0	0							
932	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Kingella	sp. HMT 932	Phylotype	Oral			HQ804648					32257	0	0	0							
933	Bacteria	Bacteroidetes	Sphingobacteriia	Sphingobacteriales	Sphingobacteriaceae	Pedobacter	sp. HMT 933	Phylotype	Unassigned			GQ023217					84567	0	0	0							
934	Bacteria	Firmicutes	Clostridia	Clostridiales	Lachnospiraceae [XIV]	Oribacterium	parvum	Named	Oral		ACB1	NR_125570					1501329	0	0	0	SEQF2777						
935	Bacteria	Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	Fastidiosipila	sanguinis	Named	Unassigned			KF098649					236753	0	0	0							
936	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 936	Phylotype	Unassigned			HM324994					970	0	0	0							
937	Bacteria	Firmicutes	Negativicutes	Selenomonadales	Selenomonadaceae	Selenomonas	sp. HMT 937	Phylotype	Oral			KF105618					970	0	0	0							
938	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	reuteri clade 938	Named	Unassigned		K16	KC700337					1598	0	0	0							
939	Bacteria	Actinobacteria	Coriobacteriia	Coriobacteriales	Atopobiaceae	Olsenella	sp. HMT 939	Phylotype	Unassigned			HM312362					133925	0	0	0							
942	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	sp. HMT 942	Phylotype	Oral			FJ976378					838	0	0	0							
943	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Prevotellaceae	Prevotella	aurantiaca	Named	Oral		OMA31	NR_112878					596085	0	0	0	SEQF2930						
944	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	sputorum	Named	Oral		CCUG 13788	JF506642					1078480	0	0	0	SEQF2776						
945	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	parahaemolyticus	Named	Oral		ATCC 10014	AJ295746					735	0	0	0	SEQF2774						
946	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Haemophilus	pittmaniae	Named	Oral		CCUG 48703						249188	0	0	0	SEQF2775						
948	Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	lactarius	Named	Oral		CCUG 66490	NR_117425					684066	0	0	0							
949	Bacteria	Proteobacteria	Gammaproteobacteria	Pasteurellales	Pasteurellaceae	Aggregatibacter	sp. HMT 949	Phylotype	Oral			JF506655					416916	0	0	0							
950	Bacteria	Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae [XI]	Peptostreptococcaceae [XI][G-3]	bacterium HMT 950	Phylotype	Unassigned			AM419965					186804	0	0	0							
951	Bacteria	Spirochaetes	Spirochaetia	Spirochaetales	Spirochaetaceae	Treponema	sp. HMT 951	Phylotype	Oral			AM420103					157	0	0	0							
952	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-1]	bacterium HMT 952	Unnamed	Oral								1476577	0	0	0	SEQF2796						
953	Bacteria	Fusobacteria	Fusobacteriia	Fusobacteriales	Fusobacteriaceae	Fusobacterium	hwasookii	Named	Oral		ChDC F128(T)						1583098	0	0	0	SEQF2840|SEQF2841|SEQF2842|SEQF2843						
954	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-7]	bacterium HMT 954	Phylotype	Oral																		
955	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-8]	bacterium HMT 955	Unnamed	Oral																		
956	Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	cinerea	Named	Oral												SEQF2899						
982	Bacteria	Chlorobi	Ignavibacteria	Ignavibacteriales	Ignavibacteriaceae	Ignavibacterium	album	NonOralRef	NonOralRef								591197	0	0	0	SEQF2719						
983	Bacteria	Chlorobi	Ignavibacteria	Ignavibacteriales	Melioribacteraceae	Melioribacter	roseus	NonOralRef	NonOralRef								1134405	0	0	0	SEQF2720						
984	Bacteria	Chlorobi	Chlorobia	Chlorobiales	Chlorobiaceae	Chlorobium	limicola	NonOralRef	NonOralRef								1092	0	0	0	SEQF2718						
986	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-7]	bacterium HMT 986	NonOralRef	NonOralRef								95818	0	0	0	SEQF2723						
987	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-7]	bacterium HMT 987	NonOralRef	NonOralRef								95818	0	0	0	SEQF2722						
988	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Candidatus Saccharimonas	aalborgensis	NonOralRef	NonOralRef								1332188	0	0	0	SEQF2721						
989	Bacteria	Saccharibacteria (TM7)	Saccharibacteria (TM7) [C-1]	Saccharibacteria (TM7) [O-1]	Saccharibacteria (TM7) [F-1]	Saccharibacteria (TM7) [G-7]	bacterium HMT 989	NonOralRef	NonOralRef								95818	0	0	0	SEQF2737						
990	Bacteria	Absconditabacteria (SR1)	Absconditabacteria (SR1) [C-2]	Absconditabacteria (SR1) [O-2]	Absconditabacteria (SR1) [F-2]	Absconditabacteria (SR1) [G-2]	bacterium HMT 990	NonOralRef	NonOralRef								221235	0	0	0	SEQF2735						
991	Bacteria	Absconditabacteria (SR1)	Absconditabacteria (SR1) [C-3]	Absconditabacteria (SR1) [O-3]	Absconditabacteria (SR1) [F-3]	Absconditabacteria (SR1) [G-3]	bacterium HMT 991	NonOralRef	NonOralRef								221235	0	0	0							
994	Bacteria	Chloroflexi	Caldilineae	Caldilineales	Caldilineaceae	Caldilinea	aerophila	NonOralRef	NonOralRef								133453	5	9	12337	SEQF2717						
995	Bacteria	Chloroflexi	Anaerolineae	Anaerolineales	Anaerolineaceae	Anaerolinea	thermophila	NonOralRef	NonOralRef								167964	4	10	9446	SEQF2715						
996	Bacteria	Gracilibacteria (GN02)	Gracilibacteria (GN02) [C-1]	Gracilibacteria (GN02) [O-1]	Gracilibacteria (GN02) [F-1]	Gracilibacteria (GN02) [G-3]	bacterium HMT 996	NonOralRef	NonOralRef								363464	0	0	0	SEQF2724						
997	Bacteria	Gracilibacteria (GN02)	Gracilibacteria (GN02) [C-1]	Gracilibacteria (GN02) [O-1]	Gracilibacteria (GN02) [F-1]	Gracilibacteria (GN02) [G-4]	bacterium HMT 997	NonOralRef	NonOralRef								363464	0	0	0	SEQF2725						
999	Bacteria	WPS-2	WPS-2 [C-1]	WPS-2 [O-1]	WPS-2 [F-1]	WPS-2 [G-1]	sp. HMT 999	NonOralRef	NonOralRef								1955638	0	0	0	SEQF2736