HOMD User Documentation     
4-3] BLAST databases
Databases available for BLAST searches:

"XXXX XXXX" contigs Blast against the whole sequence of "XXXX XXXX"
"XXXX XXXX" ORFs (na)Blast against o­nly orfs nucleotides of "XXXX XXXX"
"XXXX XXXX" ORFs (aa)Blast against o­nly orfs amino acids of "XXXX XXXX"
All oral genomes contigs Blast against the whole sequences of genomes annotated automatically by HOMD
All oral genomes ORFs (na)Blast against the orfs nucleotides of genomes annotated automatically by HOMD
All oral genomes ORFs (aa)Blast against the orfs amino acids of genomes annotated automatically by HOMD
nrBlast against NCBI non-redundant protein database (nr) - weekly updated
ntBlast against NCBI non-redundant nucleotide database (nt) - weekly updated
Article last modified on 2014-04-08 11:00:37 by lyang; viewed 274 times; Category: User Documentation; Topic: Tools & Downloa

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