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16S rRNA RefSeq: V15.23    Genomic RefSeq: V10.1
Genome Explorer: Variovorax paradoxus CSUSB (SEQF3742.1)
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PROKKA Annotation for SEQF3742.1
Genome selected: Variovorax paradoxus CSUSB
Contigs:1 Bases:5574400 bps
CDS:5131 rRNA:6
tmRNA:1 tRNA:59
Annotation Table [page:11]
Number of Records Found: 5131 [11 Pages]
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# Molecule PID Genome
Viewer
NA (Length)(Seq)
AA (Length)(Seq)
Range Gene Gene Product
5001 SEQF3742.1_CP046622.1 SEQF3742.1_05090 open 642 [NA] 213 [AA] 5443585-5444226 btuE Thioredoxinglutathione peroxidase BtuE
5002 SEQF3742.1_CP046622.1 SEQF3742.1_05091 open 612 [NA] 203 [AA] 5444552-5445163 yibF putative GST-like protein YibF
5003 SEQF3742.1_CP046622.1 SEQF3742.1_05092 open 1380 [NA] 459 [AA] 5445283-5446662 purB Adenylosuccinate lyase
5004 SEQF3742.1_CP046622.1 SEQF3742.1_05093 open 1149 [NA] 382 [AA] 5446813-5447961 hypothetical protein
5005 SEQF3742.1_CP046622.1 SEQF3742.1_05094 open 2172 [NA] 723 [AA] 5448009-5450180 fecA Fe(3+) dicitrate transport protein FecA
5006 SEQF3742.1_CP046622.1 SEQF3742.1_05095 open 561 [NA] 186 [AA] 5450215-5450775 yaeQ putative protein YaeQ
5007 SEQF3742.1_CP046622.1 SEQF3742.1_05096 open 306 [NA] 101 [AA] 5450789-5451094 hypothetical protein
5008 SEQF3742.1_CP046622.1 SEQF3742.1_05097 open 468 [NA] 155 [AA] 5451108-5451575 hypothetical protein
5009 SEQF3742.1_CP046622.1 SEQF3742.1_05098 open 744 [NA] 247 [AA] 5452061-5452804 hypothetical protein
5010 SEQF3742.1_CP046622.1 SEQF3742.1_05099 open 465 [NA] 154 [AA] 5452886-5453350 hypothetical protein
5011 SEQF3742.1_CP046622.1 SEQF3742.1_05100 open 357 [NA] 118 [AA] 5453447-5453803 hypothetical protein
5012 SEQF3742.1_CP046622.1 SEQF3742.1_05101 open 1566 [NA] 521 [AA] 5453841-5455406 bepA_3 Beta-barrel assembly-enhancing protease
5013 SEQF3742.1_CP046622.1 SEQF3742.1_05102 open 483 [NA] 160 [AA] 5455461-5455943 moaC Cyclic pyranopterin monophosphate synthase
5014 SEQF3742.1_CP046622.1 SEQF3742.1_05103 open 1704 [NA] 567 [AA] 5455962-5457665 hypothetical protein
5015 SEQF3742.1_CP046622.1 SEQF3742.1_05104 open 426 [NA] 141 [AA] 5457741-5458166 hypothetical protein
5016 SEQF3742.1_CP046622.1 SEQF3742.1_05105 open 4980 [NA] 1659 [AA] 5458187-5463166 hypothetical protein
5017 SEQF3742.1_CP046622.1 SEQF3742.1_05106 open 573 [NA] 190 [AA] 5463182-5463754 hypothetical protein
5018 SEQF3742.1_CP046622.1 SEQF3742.1_05107 open 864 [NA] 287 [AA] 5463751-5464614 hypothetical protein
5019 SEQF3742.1_CP046622.1 SEQF3742.1_05108 open 471 [NA] 156 [AA] 5464619-5465089 hypothetical protein
5020 SEQF3742.1_CP046622.1 SEQF3742.1_05109 open 438 [NA] 145 [AA] 5465188-5465625 hypothetical protein
5021 SEQF3742.1_CP046622.1 SEQF3742.1_05110 open 492 [NA] 163 [AA] 5466391-5466882 hypothetical protein
5022 SEQF3742.1_CP046622.1 SEQF3742.1_05111 open 804 [NA] 267 [AA] 5467084-5467887 rbn_2 Ribonuclease BN
5023 SEQF3742.1_CP046622.1 SEQF3742.1_05112 open 2262 [NA] 753 [AA] 5467917-5470178 hypothetical protein
5024 SEQF3742.1_CP046622.1 SEQF3742.1_05113 open 651 [NA] 216 [AA] 5470205-5470855 hypothetical protein
5025 SEQF3742.1_CP046622.1 SEQF3742.1_05114 open 807 [NA] 268 [AA] 5470926-5471732 prpC_4 Protein phosphatase PrpC
5026 SEQF3742.1_CP046622.1 SEQF3742.1_05115 open 687 [NA] 228 [AA] 5471757-5472443 hypothetical protein
5027 SEQF3742.1_CP046622.1 SEQF3742.1_05116 open 894 [NA] 297 [AA] 5472542-5473435 sucD_2 Succinate--CoA ligase [ADP-forming] subunit alpha
5028 SEQF3742.1_CP046622.1 SEQF3742.1_05117 open 1167 [NA] 388 [AA] 5473446-5474612 sucC_2 Succinate--CoA ligase [ADP-forming] subunit beta
5029 SEQF3742.1_CP046622.1 SEQF3742.1_05118 open 924 [NA] 307 [AA] 5474819-5475742 argC N-acetyl-gamma-glutamyl-phosphate reductase
5030 SEQF3742.1_CP046622.1 SEQF3742.1_05119 open 732 [NA] 243 [AA] 5475764-5476495 hypothetical protein
5031 SEQF3742.1_CP046622.1 SEQF3742.1_05120 open 471 [NA] 156 [AA] 5476618-5477088 recX Regulatory protein RecX
5032 SEQF3742.1_CP046622.1 SEQF3742.1_05121 open 1119 [NA] 372 [AA] 5477138-5478256 recA Protein RecA
5033 SEQF3742.1_CP046622.1 SEQF3742.1_05122 open 486 [NA] 161 [AA] 5478402-5478887 hypothetical protein
5034 SEQF3742.1_CP046622.1 SEQF3742.1_05123 open 675 [NA] 224 [AA] 5478955-5479629 tctD_4 Transcriptional regulatory protein tctD
5035 SEQF3742.1_CP046622.1 SEQF3742.1_05124 open 1446 [NA] 481 [AA] 5479668-5481113 sasA_19 Adaptive-response sensory-kinase SasA
5036 SEQF3742.1_CP046622.1 SEQF3742.1_05125 open 204 [NA] 67 [AA] 5481126-5481329 hypothetical protein
5037 SEQF3742.1_CP046622.1 SEQF3742.1_05126 open 825 [NA] 274 [AA] 5481338-5482162 birA Bifunctional ligaserepressor BirA
5038 SEQF3742.1_CP046622.1 SEQF3742.1_05127 open 630 [NA] 209 [AA] 5482165-5482794 hypothetical protein
5039 SEQF3742.1_CP046622.1 SEQF3742.1_05128 open 2943 [NA] 980 [AA] 5482978-5485920 topB DNA topoisomerase 3
5040 SEQF3742.1_CP046622.1 SEQF3742.1_05129 open 930 [NA] 309 [AA] 5485948-5486877 gcvA_8 Glycine cleavage system transcriptional activator
5041 SEQF3742.1_CP046622.1 SEQF3742.1_05130 open 879 [NA] 292 [AA] 5487078-5487956 hypothetical protein
5042 SEQF3742.1_CP046622.1 SEQF3742.1_05131 open 879 [NA] 292 [AA] 5488061-5488939 hypothetical protein
5043 SEQF3742.1_CP046622.1 SEQF3742.1_05132 open 147 [NA] 48 [AA] 5489086-5489232 hypothetical protein
5044 SEQF3742.1_CP046622.1 SEQF3742.1_05133 open 894 [NA] 297 [AA] 5489260-5490153 puuD Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD
5045 SEQF3742.1_CP046622.1 SEQF3742.1_05134 open 1056 [NA] 351 [AA] 5490282-5491337 iolE Inosose dehydratase
5046 SEQF3742.1_CP046622.1 SEQF3742.1_05135 open 267 [NA] 88 [AA] 5491715-5491981 hypothetical protein
5047 SEQF3742.1_CP046622.1 SEQF3742.1_05136 open 273 [NA] 90 [AA] 5492040-5492312 infA Translation initiation factor IF-1
5048 SEQF3742.1_CP046622.1 SEQF3742.1_05137 open 1443 [NA] 480 [AA] 5492395-5493837 dbpA_2 ATP-dependent RNA helicase DbpA
5049 SEQF3742.1_CP046622.1 SEQF3742.1_05138 open 171 [NA] 56 [AA] 5493938-5494108 hypothetical protein
5050 SEQF3742.1_CP046622.1 SEQF3742.1_05139 open 321 [NA] 106 [AA] 5494213-5494533 hypothetical protein
5051 SEQF3742.1_CP046622.1 SEQF3742.1_05140 open 888 [NA] 295 [AA] 5494552-5495439 hypothetical protein
5052 SEQF3742.1_CP046622.1 SEQF3742.1_05141 open 933 [NA] 310 [AA] 5495436-5496368 hypothetical protein
5053 SEQF3742.1_CP046622.1 SEQF3742.1_05142 open 702 [NA] 233 [AA] 5496441-5497142 hypothetical protein
5054 SEQF3742.1_CP046622.1 SEQF3742.1_05143 open 1296 [NA] 431 [AA] 5497139-5498434 hcnB_2 Hydrogen cyanide synthase subunit HcnB
5055 SEQF3742.1_CP046622.1 SEQF3742.1_05144 open 249 [NA] 82 [AA] 5498431-5498679 hcnA_2 Hydrogen cyanide synthase subunit HcnA
5056 SEQF3742.1_CP046622.1 SEQF3742.1_05145 open 1029 [NA] 342 [AA] 5498676-5499704 thiO Glycine oxidase
5057 SEQF3742.1_CP046622.1 SEQF3742.1_05146 open 936 [NA] 311 [AA] 5499899-5500834 4-hydroxyproline 2-epimerase
5058 SEQF3742.1_CP046622.1 SEQF3742.1_05147 open 1143 [NA] 380 [AA] 5500848-5501990 braC_7 Leucine-%2C isoleucine-%2C valine-%2C threonine-%2C and alanine-binding protein
5059 SEQF3742.1_CP046622.1 SEQF3742.1_05148 open 915 [NA] 304 [AA] 5502030-5502944 dapA_4 4-hydroxy-tetrahydrodipicolinate synthase
5060 SEQF3742.1_CP046622.1 SEQF3742.1_05149 open 1344 [NA] 447 [AA] 5503080-5504423 hipA Serinethreonine-protein kinase toxin HipA
5061 SEQF3742.1_CP046622.1 SEQF3742.1_05150 open 498 [NA] 165 [AA] 5504423-5504920 hypothetical protein
5062 SEQF3742.1_CP046622.1 SEQF3742.1_05151 open 1002 [NA] 333 [AA] 5505041-5506042 hypothetical protein
5063 SEQF3742.1_CP046622.1 SEQF3742.1_05152 open 1206 [NA] 401 [AA] 5506061-5507266 hipO_3 Hippurate hydrolase
5064 SEQF3742.1_CP046622.1 SEQF3742.1_05153 open 864 [NA] 287 [AA] 5507380-5508243 hypothetical protein
5065 SEQF3742.1_CP046622.1 SEQF3742.1_05154 open 393 [NA] 130 [AA] 5508278-5508670 hypothetical protein
5066 SEQF3742.1_CP046622.1 SEQF3742.1_05155 open 924 [NA] 307 [AA] 5508756-5509679 dmlR_27 HTH-type transcriptional regulator DmlR
5067 SEQF3742.1_CP046622.1 SEQF3742.1_05156 open 1257 [NA] 418 [AA] 5509881-5511137 hypothetical protein
5068 SEQF3742.1_CP046622.1 SEQF3742.1_05157 open 1908 [NA] 635 [AA] 5511130-5513037 hypothetical protein
5069 SEQF3742.1_CP046622.1 SEQF3742.1_05158 open 477 [NA] 158 [AA] 5513279-5513755 slyD_2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
5070 SEQF3742.1_CP046622.1 SEQF3742.1_05159 open 846 [NA] 281 [AA] 5513769-5514614 hypothetical protein
5071 SEQF3742.1_CP046622.1 SEQF3742.1_05160 open 1605 [NA] 534 [AA] 5514611-5516215 hypothetical protein
5072 SEQF3742.1_CP046622.1 SEQF3742.1_05161 open 417 [NA] 138 [AA] 5516391-5516807 hypothetical protein
5073 SEQF3742.1_CP046622.1 SEQF3742.1_05162 open 1215 [NA] 404 [AA] 5516833-5518047 hypothetical protein
5074 SEQF3742.1_CP046622.1 SEQF3742.1_05163 open 291 [NA] 96 [AA] 5518083-5518373 hypothetical protein
5075 SEQF3742.1_CP046622.1 SEQF3742.1_05164 open 1080 [NA] 359 [AA] 5518522-5519601 prtS Protease PrtS
5076 SEQF3742.1_CP046622.1 SEQF3742.1_05165 open 339 [NA] 112 [AA] 5519598-5519936 hypothetical protein
5077 SEQF3742.1_CP046622.1 SEQF3742.1_05166 open 1413 [NA] 470 [AA] 5519969-5521381 mntH Divalent metal cation transporter MntH
5078 SEQF3742.1_CP046622.1 SEQF3742.1_05167 open 309 [NA] 102 [AA] 5521413-5521721 ygiN putative quinol monooxygenase YgiN
5079 SEQF3742.1_CP046622.1 SEQF3742.1_05168 open 597 [NA] 198 [AA] 5521806-5522402 hypothetical protein
5080 SEQF3742.1_CP046622.1 SEQF3742.1_05169 open 615 [NA] 204 [AA] 5522426-5523040 hypothetical protein
5081 SEQF3742.1_CP046622.1 SEQF3742.1_05170 open 1002 [NA] 333 [AA] 5523088-5524089 gapA Glyceraldehyde-3-phosphate dehydrogenase A
5082 SEQF3742.1_CP046622.1 SEQF3742.1_05171 open 516 [NA] 171 [AA] 5524112-5524627 hypothetical protein
5083 SEQF3742.1_CP046622.1 SEQF3742.1_05172 open 2109 [NA] 702 [AA] 5524664-5526772 tktA_2 Transketolase 1
5084 SEQF3742.1_CP046622.1 SEQF3742.1_05173 open 390 [NA] 129 [AA] 5526908-5527297 speH S-adenosylmethionine decarboxylase proenzyme
5085 SEQF3742.1_CP046622.1 SEQF3742.1_05174 open 711 [NA] 236 [AA] 5527324-5528034 murU N-acetylmuramate alpha-1-phosphate uridylyltransferase
5086 SEQF3742.1_CP046622.1 SEQF3742.1_05175 open 1395 [NA] 464 [AA] 5528031-5529425 pepP Xaa-Pro aminopeptidase
5087 SEQF3742.1_CP046622.1 SEQF3742.1_05176 open 975 [NA] 324 [AA] 5529367-5530341 pgrR_13 HTH-type transcriptional regulator PgrR
5088 SEQF3742.1_CP046622.1 SEQF3742.1_05177 open 1353 [NA] 450 [AA] 5530375-5531727 hypothetical protein
5089 SEQF3742.1_CP046622.1 SEQF3742.1_05178 open 477 [NA] 158 [AA] 5531804-5532280 hypothetical protein
5090 SEQF3742.1_CP046622.1 SEQF3742.1_05179 open 378 [NA] 125 [AA] 5532277-5532654 hypothetical protein
5091 SEQF3742.1_CP046622.1 SEQF3742.1_05180 open 315 [NA] 104 [AA] 5532651-5532965 hypothetical protein
5092 SEQF3742.1_CP046622.1 SEQF3742.1_05181 open 1134 [NA] 377 [AA] 5533138-5534271 hypothetical protein
5093 SEQF3742.1_CP046622.1 SEQF3742.1_05182 open 1620 [NA] 539 [AA] 5534268-5535887 hypothetical protein
5094 SEQF3742.1_CP046622.1 SEQF3742.1_05183 open 1551 [NA] 516 [AA] 5535895-5537445 speE_2 Polyamine aminopropyltransferase
5095 SEQF3742.1_CP046622.1 SEQF3742.1_05184 open 219 [NA] 72 [AA] 5537462-5537680 hypothetical protein
5096 SEQF3742.1_CP046622.1 SEQF3742.1_05185 open 1500 [NA] 499 [AA] 5537738-5539237 hypothetical protein
5097 SEQF3742.1_CP046622.1 SEQF3742.1_05186 open 1050 [NA] 349 [AA] 5539247-5540296 hypothetical protein
5098 SEQF3742.1_CP046622.1 SEQF3742.1_05187 open 2343 [NA] 780 [AA] 5540464-5542806 maeB_2 NADP-dependent malic enzyme
5099 SEQF3742.1_CP046622.1 SEQF3742.1_05188 open 414 [NA] 137 [AA] 5542991-5543404 hypothetical protein
5100 SEQF3742.1_CP046622.1 SEQF3742.1_05189 open 480 [NA] 159 [AA] 5543401-5543880 hypothetical protein
5101 SEQF3742.1_CP046622.1 SEQF3742.1_05190 open 90 [NA] 29 [AA] 5544012-5544101 hypothetical protein
5102 SEQF3742.1_CP046622.1 SEQF3742.1_05191 open 771 [NA] 256 [AA] 5544149-5544919 rsmA Ribosomal RNA small subunit methyltransferase A
5103 SEQF3742.1_CP046622.1 SEQF3742.1_05192 open 1404 [NA] 467 [AA] 5544919-5546322 surA Chaperone SurA
5104 SEQF3742.1_CP046622.1 SEQF3742.1_05193 open 2583 [NA] 860 [AA] 5546340-5548922 lptD LPS-assembly protein LptD
5105 SEQF3742.1_CP046622.1 SEQF3742.1_05194 open 1095 [NA] 364 [AA] 5549158-5550252 amgK N-acetylmuramateN-acetylglucosamine kinase
5106 SEQF3742.1_CP046622.1 SEQF3742.1_05195 open 735 [NA] 244 [AA] 5550253-5550987 rsmE Ribosomal RNA small subunit methyltransferase E
5107 SEQF3742.1_CP046622.1 SEQF3742.1_05196 open 1365 [NA] 454 [AA] 5551066-5552430 hypothetical protein
5108 SEQF3742.1_CP046622.1 SEQF3742.1_05197 open 462 [NA] 153 [AA] 5552531-5552992 hypothetical protein
5109 SEQF3742.1_CP046622.1 SEQF3742.1_05198 open 1176 [NA] 391 [AA] 5553111-5554286 rfnT Riboflavin transporter RfnT
5110 SEQF3742.1_CP046622.1 SEQF3742.1_05199 open 849 [NA] 282 [AA] 5554294-5555142 Monoacylglycerol lipase
5111 SEQF3742.1_CP046622.1 SEQF3742.1_05200 open 1512 [NA] 503 [AA] 5555139-5556650 hypothetical protein
5112 SEQF3742.1_CP046622.1 SEQF3742.1_05201 open 798 [NA] 265 [AA] 5556743-5557540 hypothetical protein
5113 SEQF3742.1_CP046622.1 SEQF3742.1_05202 open 519 [NA] 172 [AA] 5557548-5558066 hypothetical protein
5114 SEQF3742.1_CP046622.1 SEQF3742.1_05203 open 939 [NA] 312 [AA] 5558203-5559141 hypothetical protein
5115 SEQF3742.1_CP046622.1 SEQF3742.1_05204 open 591 [NA] 196 [AA] 5559086-5559676 yigZ IMPACT family member YigZ
5116 SEQF3742.1_CP046622.1 SEQF3742.1_05205 open 588 [NA] 195 [AA] 5559716-5560303 metXA_2 Bifunctional methionine biosynthesis protein MetXAMetW
5117 SEQF3742.1_CP046622.1 SEQF3742.1_05206 open 1143 [NA] 380 [AA] 5560300-5561442 metXS Homoserine O-succinyltransferase
5118 SEQF3742.1_CP046622.1 SEQF3742.1_05207 open 564 [NA] 187 [AA] 5561608-5562171 mneA Putative manganese exporter
5119 SEQF3742.1_CP046622.1 SEQF3742.1_05209 open 564 [NA] 187 [AA] 5562630-5563193 hypothetical protein
5120 SEQF3742.1_CP046622.1 SEQF3742.1_05210 open 783 [NA] 260 [AA] 5563295-5564077 putative oxidoreductase
5121 SEQF3742.1_CP046622.1 SEQF3742.1_05211 open 645 [NA] 214 [AA] 5564109-5564753 lptC Lipopolysaccharide export system protein LptC
5122 SEQF3742.1_CP046622.1 SEQF3742.1_05212 open 549 [NA] 182 [AA] 5564750-5565298 kdsC 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC
5123 SEQF3742.1_CP046622.1 SEQF3742.1_05213 open 999 [NA] 332 [AA] 5565298-5566296 kdsD Arabinose 5-phosphate isomerase KdsD
5124 SEQF3742.1_CP046622.1 SEQF3742.1_05214 open 1986 [NA] 661 [AA] 5566384-5568369 kefC_2 Glutathione-regulated potassium-efflux system protein KefC
5125 SEQF3742.1_CP046622.1 SEQF3742.1_05215 open 954 [NA] 317 [AA] 5568412-5569365 hypothetical protein
5126 SEQF3742.1_CP046622.1 SEQF3742.1_05216 open 462 [NA] 153 [AA] 5569451-5569912 hypothetical protein
5127 SEQF3742.1_CP046622.1 SEQF3742.1_05217 open 1419 [NA] 472 [AA] 5570003-5571421 mnmE tRNA modification GTPase MnmE
5128 SEQF3742.1_CP046622.1 SEQF3742.1_05218 open 1686 [NA] 561 [AA] 5571499-5573184 yidC Membrane protein insertase YidC
5129 SEQF3742.1_CP046622.1 SEQF3742.1_05219 open 288 [NA] 95 [AA] 5573181-5573468 yidD Putative membrane protein insertion efficiency factor
5130 SEQF3742.1_CP046622.1 SEQF3742.1_05220 open 396 [NA] 131 [AA] 5573465-5573860 rnpA Ribonuclease P protein component
5131 SEQF3742.1_CP046622.1 SEQF3742.1_05221 open 135 [NA] 44 [AA] 5573947-5574081 rpmH 50S ribosomal protein L34